Output_id: SelH.1.selenocysteine
---------- ---------------------
-Species Chlorocebus sabaeus -Taxid 60711
-Target /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782591|gb|CM001941.1|
-Program genewise
-Query name gi|194218122|ref|XP_001915098.1| PREDICTED: similar to Selenoprotein H [Equus caballus]
-Query range 1-121 length:121 coverage: 1.0
-Profile range 1-332 length:332 coverage: 1.0 sec_position: [186]
-ASI: 0.3245 (ignoring gaps: 0.3893)
-AWSIc: 0.5936 Z-score: 0.839
-AWSIw: 0.6027 Z-score: 0.679
-State kept
------- alignment -------
Query MASRGRKRKAEA-VVAVAEKREKLTSGGKGVEEVTVVIEHC <---Intron---> TSURVYGRNAAALSQALRLEAPELPVKVNPAKPRRGSFEVTLL
|| ||||||||| /|| ||||||| / |/|/|| ||||||| < 89nt > |||||||||||||||||||||||||||||| ||||||||||||
Target MAPRGRKRKAEAAMVAAAEKREKLANSGEGMEEATVVIEHC TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL
agccgaacaggggagggggacgacgaagggagggaggagct aatcgtgcagggcacgcccggcgccgagacaaccagatggacc
tccgggagacaccttcccaagaatcaggagtaacctttaag gt ag cgggtaggaccctgactgtaccatctataccacggggtatctt
gtcctggggtgcggccacggagggaccggagggacttcgt cgcacctgcccgcgtgggcggcagtaaggcgcgcggcccagggg
*
Query RPDGSS <---Intron---> AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
|||||| < 143nt > ||||||||||||||||||||||||||||||||
Target RPDGSS AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
ccggaa ggctagaaagcccacatcgccgggggtaatct
gcagg gt ag gcatgcgtaagccgatatcacaattaataaatc
cgccc tggcgtgtgggcacacactgtggggaggggcgg
------- positions -------
Exon 1 15488727 15488848
Exon 2 15488492 15488637
Exon 3 15488251 15488348
-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon:
TAG
*