genewise output Score 21.42 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000081_2.0 54 ALRALPVEAPPPGPEGAPSAPRP A + P A PP P +PS P P AFQTFPPSARPPNPVLSPSPPSP gi|406021613|g220794 gtcatcctgcccacgctctcctc ctactccccgccacttccccccc acgctcctactgctatccccttc // >gi|406021613|gb|JH823634.1|:subseq(850000,300000).pep AFQTFPPSARPPNPVLSPSPPSP // >gi|406021613|gb|JH823634.1|:subseq(850000,300000).[220794:220862].sp GCATTCCAGACCTTTCCCCCCTCTGCACGCCCTCCGAACCCTGTACTTTCCCCCTCCCCC CCTTCTCCC // gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise match 220794 220862 21.42 + . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 220794 220862 0.00 + 0 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 // genewise output Score 1098.18 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000081_2.0 1 MAVYRAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLR M+ RAALG SL AAR + L A ST S AAMEP PRWLAGLR MSALRAALGISLTAARAVSLNLGGRRHANCST-SAAAMEPPPRWLAGLR gi|406021613|g-30049 atgcaggcgatcaggcggttacggcccgatta tgggagccccttggcc tcctgcctgtctcccgctctatggggacagcc cccctacccggtcgtg gtgcgcggtcgttgtccgggctcgcacgcccc gcccggggtcggaggc SPP00000081_2.0 50 FDNRALRALPVEAPPPGPEGAP--SAPRPVPGACFTRVQPTPLRQPRLV FDNRALRALPVE PP GPE A APRPVPGACF+R +PTPL++PRLV FDNRALRALPVETPP-GPEDAAVEPAPRPVPGACFSRARPTPLQEPRLV gi|406021613|g-29905 tgacgccgccggacc gcggggggcgcccgcggttacgccacccgcccg taagctgctctaccc gcaacctacccgctcgcgtggcgccctaacgtt ccccgtcggggatgg cgacccggcagacgcgcccccgccgctgggccg SPP00000081_2.0 97 ALSEPALALLGLGAPPAREA-----EAEAALFFSGNALLPGAEPAAHCY ALSEPALALLGL PPA +A EAEAALFFSGNALLPGAEPAAHCY ALSEPALALLGLCPPPADDADAAAREAEAALFFSGNALLPGAEPAAHCY gi|406021613|g-29761 gctgcgcgccgctcccggggggggcgggggcttagagcccgggcggctt ctcacctcttgtgccccaacacccgacacctttggacttcgcacccaga gtggcgggggggctgctcccccgccgggcgcctcccggagcaggttccc SPP00000081_2.0 141 CGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS CGHQFGQFAGQLGDGAAMYLGEVC GERWELQLKGAGPT FS CGHQFGQFAGQLGDGAAMYLGEVCPEAGERWELQLKGAGPTVFS gi|406021613|g-29614 tgcctgctggccgggggattgggtcggggctgcccagggcagtt ggaatgatcgatgagcctatgatgcacgaggatatagcgccttc cccgccgccgggcccccgcgaggtggtcgcggggcgtaccgccc SPP00000081_2.0 185 QADGRKVLRSSIREFLCSEAMFH QADGRKVLRSSIREFLCSEAMFH R:R[agg] QADGRKVLRSSIREFLCSEAMFH gi|406021613|g-29482 AGGTGCGCG Intron 1 CAGGcgggcagcctaacgtctaggatc <2-----[29480:27517]-2> acaggattgcgtgattggactta gttcagcgcccctgcgccacgcc SPP00000081_2.0 209 LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI LGVPTTRAGACVTS STVVRDVFYDGNPK E C VVLR+A TFI LGVPTTRAGACVTSASTVVRDVFYDGNPKRENCAVVLRIAPTFI gi|406021613|g-27446 cggcaacgggtgatgtaggcggttggacacgatgggtcagcata tgtcccgcgcgtcccccttgattaagacagaagctttgtccctt gacccggcgctcgtccatggtgcttttaggaccgtggcatctca SPP00000081_2.0 253 FGSFEIFKSADEHTGRAGPSVGR FGSFEIFKSAD TGR GPSVGR R:R[agg] FGSFEIFKSADVLTGREGPSVGR gi|406021613|g-27314 AGGTAACGC Intron 2 CAGGtgttgatatgggcagcggcagga <2-----[27312:26758]-2> tgctattaccattcggagcgtgg tgttgttgtatgcggcgccctgg SPP00000081_2.0 277 NDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE NDIRVQ+LDYVI SFYPEIQAAH D V+RN AFFRE NDIRVQMLDYVIGSFYPEIQAAHTDDRVRRNTAFFRE gi|406021613|g-26687 agacgcatgtgagtttcgacggcaggcgaaaagttcg aatgtattaattgctacataccacaagtggaccttga cccgcggactgtcccctgcggtcccctgggcacccgg SPP00000081_2.0 314 VTRRTARMVAEWQCVGFCHGVLNTDN VTRRTAR+VAEWQCVGFCHGVLNTDN VTRRTARLVAEWQCVGFCHGVLNTDN gi|406021613|g-26576 GTGGGAT Intron 3 CAGgaccagccgggtctggttcggcaaga <0-----[26576:26296]-0>tcggccgttcagagtgtgagttacaa gagtaccggcgggtcctcttgcctcc SPP00000081_2.0 340 MSILGLTIDYGPFGFLD YDPDHV MSILGLTIDYGPFGFLD YDP+HV MSILGLTIDYGPFGFLD R:R[agg] YDPEHV gi|406021613|g-26217 aaacgcaagtgctgtcgAGGTCAGCA Intron 4 CAGGtgcgcg tgttgtctaagctgtta <2-----[26164:25994]-2> aacaat gctggcctccgccctgc ttcgtg SPP00000081_2.0 364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA CNASDN GRYAYS+QPEVCRWNL+KLAEAL PELPL++ EA+LAEE+D CNASDNGGRYAYSRQPEVCRWNLQKLAEALVPELPLDMAEAVLAEEYDI gi|406021613|g-25974 tagtgaggctgtaaccggtataccacgggcgcgcccgaggggcgggtga gaccaagggacaggacatgggataatcacttcatctatcacttcaaaat ctccccgtccaccaggggcggcggggagcagcggcgcgcgccgcggccc SPP00000081_2.0 413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT EFQRHYLQKMRRKLGLV+VELE+D LV++LLETMHLT EFQRHYLQKMRRKLGLVRVELEDDSVLVARLLETMHLT gi|406021613|g-25827 gtccctccaaccacgcgcggcgggtgcggcccgaacca atagaataatggatgttgtataaactttcgttactatc gcggccagagcgggcgggggggccagggcgcggcgtgt SPP00000081_2.0 451 ADFTNTFYLLSSFPVELESPGLA ADFTNTF LLS+F P A G:G[ggg] ADFTNTFCLLSAFETGPSMPEQA gi|406021613|g-25713 GGTGAGCC Intron 5 CAGGGggtaaattctagtgagctacgcg <1-----[25712:25595]-1> catcactgttgctacgcctcaac tcccccccggtccggccggcgga SPP00000081_2.0 475 EFLARLMEQCASLEELRLAFRPQMDP FL +L++QCASLEEL+ A RPQMDP AFLEQLLQQCASLEELKRAARPQMDP R:R[cgg] gi|406021613|g-25523 gtcgcctcctgttggcacggcccagcCGGTAGGAC Intron 6 cttaattaagcctaatagccgcatac <2-----[25443:25134] ccgggagggcacggggggaggcggtc SPP00000081_2.0 501 QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE QL++MLMLAQSNPQL+AL+G++A + REL+R EQ++RLEQLS AE QLALMLMLAQSNPQLLALVGSQATLERELQRTEQRARLEQLSLAE gi|406021613|g-25136 CAGGccgcacatgctaccccgcggacgacgcgcccagccgacgccacgg -2> atctttttcacacattcttggacctagatagcaagcgtaatgtca gcagggggaggcgagggcggcgccggggggcggggcgggggcgtg SPP00000081_2.0 547 LQSRNQGHWADWLQAY ARLDKDL LQ+++Q W WLQ Y ARL+KD LQAQHQARWTGWLQEY R:S[agc] ARLEKDA gi|406021613|g-24997 ccgcccgctagtccgtAGGTAGGCC Intron 7 CAGCgccgagg tacaaacggcggtaaa <2-----[24947:24852]-2> cgtaaac agcgcaccggcgcgac atgggta SPP00000081_2.0 571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEV EGAGD AWQ EHVR+MH NNPKYVLRNYIAQNAIEAAE GDFSE EGAGDTEAWQVEHVRLMHDNNPKYVLRNYIAQNAIEAAENGDFSEA gi|406021613|g-24829 gggggaggtcggcgccacgaacatgccatagcagaggggaggttgg agcgacacgataatgttaaaacaattgaatcaactaccaagatcac agtccaacgggatggcgtccccgcgggccccgcccgccgcgccaga SPP00000081_2.0 617 --------RRVLKLLETPYHCEA RVLKLL+ PYH -:A[gcg] LTPTALQVQRVLKLLQAPYH--- gi|406021613|g-24691 GGTCCCCA Intron 8 TAGCGcacagccgccgtactcgctc <1-----[24690:24641]-1> tcccctatagttattaccaa ctctcggcgaggggggttct SPP00000081_2.0 632 GAATDAEATEADGADGRQRSYSSKPPLWAAELCVT + E T G +QRSYSSKPPLW AELCVT --RGEEEPTGTTGTGDQQRSYSSKPPLWGAELCVT gi|406021613|g-24578 cggggcagaagaggcccttaaaccctgggctga ggaaaccgccgcgaaagcaggacctggcatgtc tgggactgcagttcagcccccgcacggtggccg // Making a R in phase 2 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a S in phase 2 intron Making a A in phase 1 intron >gi|406021613|gb|JH823634.1|:subseq(850000,300000).pep MSALRAALGISLTAARAVSLNLGGRRHANCSTSAAAMEPPPRWLAGLRFDNRALRALPVE TPPGPEDAAVEPAPRPVPGACFSRARPTPLQEPRLVALSEPALALLGLCPPPADDADAAA REAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCPEAGERWELQL KGAGPTVFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSASTVVRDVFYDGN PKRENCAVVLRIAPTFIRFGSFEIFKSADVLTGREGPSVGRNDIRVQMLDYVIGSFYPEI QAAHTDDRVRRNTAFFREVTRRTARLVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFL DRYDPEHVCNASDNGGRYAYSRQPEVCRWNLQKLAEALVPELPLDMAEAVLAEEYDIEFQ RHYLQKMRRKLGLVRVELEDDSVLVARLLETMHLTGADFTNTFCLLSAFETGPSMPEQAA FLEQLLQQCASLEELKRAARPQMDPRQLALMLMLAQSNPQLLALVGSQATLERELQRTEQ RARLEQLSLAELQAQHQARWTGWLQEYSARLEKDAEGAGDTEAWQVEHVRLMHDNNPKYV LRNYIAQNAIEAAENGDFSEAALTPTALQVQRVLKLLQAPYHRGEEEPTGTTGTGDQQRS YSSKPPLWGAELCVT // >gi|406021613|gb|JH823634.1|:subseq(850000,300000).[30049:24478].sp ATGTCTGCGCTCAGGGCCGCGCTGGGTATCTCGCTTACTGCGGCTCGCGCCGTGTCGTTG AACCTTGGCGGGCGCCGACACGCGAACTGCTCCACCTCGGCCGCCGCCATGGAGCCGCCG CCTCGCTGGTTGGCAGGGCTGCGCTTCGACAACCGCGCGCTTCGCGCGCTGCCGGTGGAA ACTCCGCCGGGCCCGGAAGACGCCGCCGTGGAGCCCGCACCGCGACCCGTGCCCGGGGCC TGCTTCAGCCGCGCGCGCCCCACGCCCCTTCAGGAGCCGCGCCTCGTGGCGCTTTCGGAG CCCGCGCTGGCGCTGCTGGGGCTGTGCCCTCCGCCCGCTGACGACGCCGACGCCGCGGCC CGCGAGGCGGAGGCCGCGCTCTTCTTTAGCGGCAACGCGCTGCTACCGGGCGCAGAGCCG GCTGCTCACTGCTACTGCGGCCACCAGTTCGGCCAGTTCGCCGGGCAGCTGGGCGACGGC GCCGCCATGTACTTGGGAGAGGTGTGTCCGGAGGCTGGCGAGCGCTGGGAGCTGCAGCTC AAGGGTGCAGGCCCCACGGTCTTCTCCAGGCAGGCTGATGGCCGAAAGGTCCTGCGCTCC AGCATCCGTGAGTTCCTGTGCAGCGAAGCCATGTTCCACCTGGGAGTCCCCACCACGCGG GCCGGGGCCTGTGTCACGTCTGCCTCCACAGTTGTGCGGGATGTGTTCTATGATGGTAAT CCAAAGCGGGAAAACTGCGCGGTTGTGTTGCGCATAGCTCCCACTTTCATAAGGTTTGGG TCTTTTGAGATTTTTAAGTCTGCAGATGTGCTCACGGGGCGCGAGGGCCCCAGCGTTGGG AGGAACGACATCCGGGTCCAGATGTTAGACTATGTGATTGGCTCCTTCTACCCTGAGATC CAGGCGGCTCACACCGACGACCGTGTGAGGAGGAACACAGCCTTCTTCCGGGAGGTGACA CGGCGTACAGCCCGCCTGGTGGCCGAGTGGCAGTGTGTCGGCTTTTGCCATGGTGTGCTC AACACTGACAACATGAGCATTCTGGGGCTCACCATTGACTACGGGCCCTTCGGCTTTCTG GACAGGTATGATCCCGAGCATGTGTGCAATGCCTCCGACAACGGGGGTCGCTACGCATAC AGCAGACAGCCGGAGGTGTGCAGGTGGAACCTGCAGAAGCTGGCAGAGGCCCTAGTGCCC GAGCTGCCCCTGGACATGGCCGAGGCCGTCCTGGCCGAGGAGTACGACATCGAGTTCCAG CGGCACTACCTACAGAAAATGCGCCGGAAGCTGGGCCTGGTGCGGGTGGAGCTGGAGGAC GACTCAGTGCTGGTGGCCCGGCTCCTGGAGACCATGCATCTGACTGGGGCTGACTTCACC AACACCTTCTGCCTGTTGAGTGCCTTCGAGACGGGCCCCTCGATGCCCGAGCAGGCAGCC TTCCTGGAGCAGCTATTGCAGCAGTGCGCATCCTTGGAGGAGCTGAAGCGGGCAGCGCGG CCCCAGATGGATCCCCGGCAGCTCGCACTGATGCTGATGTTGGCACAGTCGAACCCGCAA CTGCTGGCGCTCGTGGGGAGCCAGGCCACCCTGGAGCGGGAGCTGCAGCGCACGGAGCAG CGGGCCAGGCTGGAGCAGCTGAGCCTGGCTGAGCTACAGGCCCAGCACCAAGCCCGCTGG ACGGGCTGGCTCCAGGAATACAGCGCACGTCTGGAGAAGGATGCAGAAGGGGCTGGCGAC ACAGAAGCCTGGCAGGTGGAACATGTGCGGCTCATGCATGACAACAACCCCAAGTACGTG CTGCGGAACTACATCGCCCAGAACGCCATCGAGGCCGCCGAGAACGGGGACTTCTCAGAG GCAGCGCTCACTCCCACTGCCCTGCAGGTCCAGCGAGTGTTGAAGCTGTTGCAGGCTCCT TACCATCGTGGGGAGGAGGAACCCACTGGGACCACAGGGACTGGTGACCAACAGCGCTCC TACAGCAGCAAGCCCCCACTCTGGGGGGCTGAGCTGTGCGTCACG // gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise match 30049 24480 1114.15 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 30049 29481 0.00 - 0 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 29480 27517 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 27516 27313 0.00 - 1 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 27312 26758 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 26757 26577 0.00 - 1 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 26576 26296 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 26295 26165 0.00 - 0 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 26164 25994 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 25993 25713 0.00 - 1 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 25712 25595 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 25594 25444 0.00 - 2 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 25443 25134 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 25133 24948 0.00 - 1 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 24947 24852 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 24851 24691 0.00 - 1 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise intron 24690 24641 0.00 - . gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 gi|406021613|gb|JH823634.1|:subseq(850000,300000) GeneWise cds 24640 24480 0.00 - 2 gi|406021613|gb|JH823634.1|:subseq(850000,300000)-genewise-prediction-1 //