genewise output Score 21.37 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000079_2.0 110 VQWCSHSSLQPQLPWLNXSSCLSLLRSTPA V W QP L L S+ L RSTPA VWWMDEPKHQPSLEALQRSTATRLGRSTPA gi|406021944|gb89410 gttaggcacccacggccctagaccgcaacg tggtaacaaacgtactagccccgtgggccc tgggcaagcatctacggaggcaggtctctg // >gi|406021944|gb|JH823303.1|:subseq(11757559,220000).pep VWWMDEPKHQPSLEALQRSTATRLGRSTPA // >gi|406021944|gb|JH823303.1|:subseq(11757559,220000).[89410:89499].sp GTTTGGTGGATGGACGAACCAAAGCACCAACCTAGCCTTGAAGCCCTGCAGCGATCGACG GCCACACGGCTGGGTCGCAGTACCCCTGCG // gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise match 89410 89499 21.37 + . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 89410 89499 0.00 + 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 // genewise output Score 995.24 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000079_2.0 26 RRARSLALLGALLAAAAAAAV-RVCARHAEAQAAARQ RR R+LALLGALLAAAAAAA R HAEAQAAA Q RRVRALALLGALLAAAAAAAAARAYTHHAEAQAAALQ gi|406021944|-121005 ccgcgtgccggccgggggggggcgtaccgggcgggcc ggtgctcttgcttcccccccccgcacaacacacccta cccccgggtacgcccttatcccgccccccgcggcggg SPP00000079_2.0 62 ELALKTLGTDGLFLFSSLDTDGDMYI + ALK LGT+GLFLFSSLDTD DMYI DSALKALGTEGLFLFSSLDTDRDMYI gi|406021944|-120894 GTCCGGC Intron 1 CAGgtgcagcgaggctcttttgagcgata <0-----[120894:12001-0>acctactgcagttttcctacagatat caaggtggaacctcctcgctcacgtc SPP00000079_2.0 88 SPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNXS SPEEFKPIAEKLTG+ G C S P P ++ SPEEFKPIAEKLTGTRRDRGLG-KGCPRQSFPP-APNRLAA gi|406021944|-119934 acggtacaggacagaaagcgcg agtcacatcc gcactgg gcaatactcaatcgcggaggtg aggcgagtcc ccagtcc ccgacacttgggatcgacgagg gacaggtcca ccccgtt SPP00000079_2.0 129 CLSLLRSTPAASCEEEELPPDPS + + STPA S E+EELPPDPS S:V[gtt] VICVSGSTPATSYEDEELPPDPS gi|406021944|-119817 GTGTCTTCA Intron 2 CAGTgatgtgtacgaatggggcccgca <2-----[119815:11247-2> ttgtcgcccccgaaaaatccacg cctcagtatccctgtgggctcct SPP00000079_2.0 153 EETLTIEARFQPLLPETMTKSKDGFLG EETLTIEARFQPLLPETMTKSKDGFLG EETLTIEARFQPLLPETMTKSKDGFLG gi|406021944|-112408 ggacaaggctcccccgaaaaaaggtcgGTGAGTT Intron 3 aactctacgtacttcactcagaagttg<0-----[112327:110115 ggtccagcacgtgcggcgcgcgcgcgg SPP00000079_2.0 180 VSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQ-ELGEPWWII VSRLALSGLRNWT AASPSAVFA RHF+PFLPP GQ ELGEPWWII VSRLALSGLRNWTTAASPSAVFAARHFRPFLPPRGQVELGEPWWII gi|406021944|-110117 CAGgtccgctgccataaggtcaggtggcctcctccccgcggcggcttaa -0>tcgtctcgtgagccccccgcttccgatgcttccggatatgacggtt cccgcgttcccgccacaacaattccccgcccatgcggggtgcggcc SPP00000079_2.0 225 PSELSMFTGYLSNNRFYPPPPKGKE V PSELS+FTGYLSNNRFYPPPPKGKE V PSELSVFTGYLSNNRFYPPPPKGKE V gi|406021944|-109976 cagcagtagtttaacttccccagagGTGAGGG Intron 4 CAGg cgatgttcgatcaagtaccccagaa<0-----[109901:10975-0>t ctggtcccccgccccccaaccgcgg c SPP00000079_2.0 251 IIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMF IIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMF IIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMF gi|406021944|-109749 aaccccaatcccctgaactgccggggttagaagtttagat ttagttgttacgcttacgtccagctcgtcctgataacttt cccgcgcgcctgtcggccttcgttcctgtccctccctggc SPP00000079_2.0 291 IHAEFQLSEPPDFPFWFSPAQFT IHAEFQLSEPPDFPFWFSP QFT R:R[cgg] IHAEFQLSEPPDFPFWFSPGQFT gi|406021944|-109629 CGGTGAGTG Intron 5 CAGGacggtccagccgtcttttcgcta <2-----[109627:10919-2> tacatatgaccatctgtccgatc ctcgcgccggtccccgcctcgcc SPP00000079_2.0 315 GHIILSKDATHVRDFRLFVPNH S GHIILSKDATHVRDFRLFVPNH S GHIILSKDATHVRDFRLFVPNH R:R[agg] S gi|406021944|-109119 gcaactaggacgcgtcctgcacAGGTAGAAG Intron 6 CAGGt gatttcaaccatgatgtttcaa <2-----[109051:10732-2> c ccccccatcctccctgctgccc t SPP00000079_2.0 339 LNVDMEWLYGASESSNMEVDIGYIPQ LNVDMEWLYGASESSNMEVDIGYIPQ LNVDMEWLYGASESSNMEVDIGYIPQ gi|406021944|-107315 caggagtctggagaaaagggagtaccGTGAGCA Intron 7 CAG tatatagtagcgaggatatatgatca<0-----[107237:10691-0> ccgcggggtgctgcctgggccctacg SPP00000079_2.0 365 MELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEE MELEATGPS+PSVILDEDG++IDSHLPSGEPLQFVFE+I WQQELSWEE MELEATGPSMPSVILDEDGNVIDSHLPSGEPLQFVFEDITWQQELSWEE gi|406021944|-106918 agcggagctactgacggggagagaccctggccctgtggaatccgcatgg tataccgcctcctttaaagattagatccgactatttaatcgaaatggaa ggagcgccagctgtgtgtctgccccgcgggcggtgtgccagggggcggg SPP00000079_2.0 414 AARRLEVAMYPFKK VSYLPFTEAFDR A RRLEVAMYPFKK VSYLPFTEAFDR ATRRLEVAMYPFKK VSYLPFTEAFDR gi|406021944|-106771 gacctgggatctaaGTGAGGC Intron 8 CAGgatcctaggtgc ccggtatctactaa<0-----[106729:10648-0>tgatctcactag tcgcgggcgcccgg cccggctgccca SPP00000079_2.0 440 AKAENKLVHSILLWGALDDQSCX AKAENKLVHSILLWGALDDQSCX AKAENKLVHSILLWGALDDQSCX G:G[ggt] gi|406021944|-106449 gaggaacgctacctggcggctttGGTGAGGG Intron 9 CAGGT cacaaattactttggctaaacgg <1-----[106379:10530-1> cgtacaggcgcggggcgttgcca SPP00000079_2.0 464 SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ gi|406021944|-105306 tgcaccgagcgatcacaccagataaattcgagcggcc cggctgacttagccttcttaagttgcgcttaataata aggtcggtcggtgcccccccgctcccggggggggggg SPP00000079_2.0 501 NNQENSSHQKLAGLHLEKYSFPVEMM N+QEN SH+KLAGLHLEKYSFPVEM+ NSQENPSHKKLAGLHLEKYSFPVEMI gi|406021944|-105195 GTGAGTG Intron 10 CAGaacgactcaacggcccgatatcggaa <0-----[105195:10510-0>agaaaccaaatcgtataaagtctatt ccggcaccgggtcgcgggccccgggc SPP00000079_2.0 527 ICLPNGTV VHHINANYFLDITSVKPE ICLPNGTV VHHINANYFLDITS+KPE ICLPNGTV VHHINANYFLDITSMKPE gi|406021944|-105026 atccagagGTAAGCA Intron 11 CAGgccaagattcgaataacg tgtcagct<0-----[105002:10375-0>taatacaattatcctaca ccgctctg tctccccccgccccgatg SPP00000079_2.0 553 EIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP +IES FSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP DIESKAFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP gi|406021944|-103699 gagaagtatttatggctagatactcaggcccgcccccc atagactgtccctaacccccatattaagtgggtcttac ccgcgccccacctacacttccggcgggtcgacgcccgc // Making a V in phase 2 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron >gi|406021944|gb|JH823303.1|:subseq(11757559,220000).pep RRVRALALLGALLAAAAAAAAARAYTHHAEAQAAALQDSALKALGTEGLFLFSSLDTDRD MYISPEEFKPIAEKLTGTRRDRGLGKGCPRQSFPPAPNRLAAVVICVSGSTPATSYEDEE LPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTTAASPSAVFAARHF RPFLPPRGQVELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFV KTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATH VRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSMPSVILDEDGNV IDSHLPSGEPLQFVFEDITWQQELSWEEATRRLEVAMYPFKKVSYLPFTEAFDRAKAENK LVHSILLWGALDDQSCXGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNSQEN PSHKKLAGLHLEKYSFPVEMIICLPNGTVVHHINANYFLDITSMKPEDIESKAFSFSSTF EDPSTATYMQFLKEGLRRGLPLLQP // >gi|406021944|gb|JH823303.1|:subseq(11757559,220000).[121005:103584].sp CGCCGCGTCCGCGCCTTGGCGCTGCTTGGAGCCCTGCTCGCCGCCGCTGCTGCAGCTGCC GCCGCCCGGGCCTACACCCACCACGCCGAGGCCCAGGCGGCCGCGCTGCAGGACTCAGCA CTGAAGGCTCTGGGGACAGAAGGCCTCTTTCTCTTCTCTTCCTTGGACACTGACCGAGAC ATGTATATCAGCCCCGAGGAATTCAAACCCATTGCTGAGAAGCTGACAGGTACCAGGAGA GACCGGGGACTGGGGAAGGGATGCCCAAGGCAGAGTTTCCCCCCAGCCCCCAACCGCTTG GCTGCTGTTGTCATCTGTGTCTCAGGGTCTACACCTGCCACCAGCTATGAGGATGAGGAG CTGCCCCCTGACCCCAGTGAGGAGACTCTCACCATAGAGGCCCGATTCCAGCCTCTGCTC CCGGAGACCATGACCAAGAGCAAGGACGGGTTCCTGGGGGTCTCCCGCCTGGCCCTGTCT GGTCTCCGCAACTGGACCACCGCAGCCTCACCAAGCGCAGTATTTGCTGCCCGCCACTTC CGGCCCTTCCTCCCACCTCGGGGCCAGGTGGAGCTGGGTGAGCCCTGGTGGATCATCCCC AGTGAGCTGAGTGTCTTCACCGGCTACTTGTCCAACAACCGCTTCTACCCACCACCCCCC AAGGGCAAGGAGGTCATCATCCACCGGCTCCTGAGCATGTTCCACCCTCGGCCTTTCGTG AAGACCCGCTTTGCTCCCCAGGGTGCTGTCGCCTGTTTGACTGCCATCAGCGATTTCTAC TACACTGTGATGTTCCGGATCCATGCCGAGTTCCAGCTCAGCGAGCCGCCTGACTTCCCC TTCTGGTTCTCCCCTGGCCAGTTCACCGGCCACATCATCCTCTCCAAAGATGCCACCCAT GTCCGCGACTTTCGGCTCTTTGTGCCCAACCACAGGTCTCTCAACGTGGACATGGAGTGG CTGTATGGGGCCAGTGAGAGCAGCAATATGGAGGTGGACATCGGCTATATACCCCAGATG GAGCTAGAGGCCACGGGCCCCTCAATGCCCTCTGTGATTCTGGATGAGGATGGCAATGTG ATCGACAGCCACCTGCCCTCGGGGGAGCCCCTGCAGTTTGTGTTTGAGGACATCACATGG CAGCAGGAGCTGAGCTGGGAGGAGGCTACCCGGCGCTTGGAGGTGGCCATGTACCCCTTC AAGAAGGTCAGCTACCTGCCGTTCACTGAGGCCTTCGACCGAGCCAAGGCTGAAAACAAA CTGGTGCACTCGATCCTGCTGTGGGGGGCCCTGGATGATCAGTCCTGCTGAGGTTCAGGG CGGACTCTCCGGGAGACTGTCCTGGAGAGTTCGCCCATCCTCACCCTCCTCAACGAGAGC TTTATCAGCACCTGGTCGCTGGTGAAGGAGCTGGAGGAGCTGCAGAACAGCCAGGAGAAC CCATCCCACAAGAAGCTGGCTGGCCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGATG ATCATCTGCCTGCCCAATGGCACTGTGGTTCACCATATCAACGCCAACTACTTCCTGGAC ATCACCTCCATGAAACCTGAGGACATCGAGAGCAAGGCCTTCAGCTTCTCATCCACCTTT GAAGACCCATCCACTGCTACCTACATGCAGTTCCTGAAGGAGGGTCTCCGGCGAGGCCTG CCCCTCCTCCAGCCC // gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise match 121005 103586 995.24 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 121005 120895 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 120894 120013 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 120012 119816 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 119815 112479 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 112478 112328 0.00 - 1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 112327 110115 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 110114 109902 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 109901 109753 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 109752 109628 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 109627 109190 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 109189 109052 0.00 - 1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 109051 107320 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 107319 107238 0.00 - 1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 107237 106919 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 106918 106730 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 106729 106486 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 106485 106380 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 106379 105309 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 105308 105196 0.00 - 2 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 105195 105105 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 105104 105003 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise intron 105002 103754 0.00 - . gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 gi|406021944|gb|JH823303.1|:subseq(11757559,220000) GeneWise cds 103753 103586 0.00 - 0 gi|406021944|gb|JH823303.1|:subseq(11757559,220000)-genewise-prediction-1 //