TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00002146_2.0 # Protein # Selenoprotein U2 (SelU2) #
Softshell turtle (Pelodiscus sinensis)
         (228 letters)

Database: /cursos/BI/genomes/project_2014/Chelonia_mydas/genome.fa 
           140,022 sequences; 2,208,393,880 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|465975580|gb|KB533688.1| Chelonia mydas unplaced genomic scaf...    35   1.8  
gi|465961630|gb|KB556236.1| Chelonia mydas unplaced genomic scaf...    33   8.9  
gi|465979372|gb|KB529134.1| Chelonia mydas unplaced genomic scaf...    33   8.9  

>gi|465975580|gb|KB533688.1| Chelonia mydas unplaced genomic scaffold
              scaffold315, whole genome shotgun sequence
          Length = 2791357

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = +2

Query: 2      PAPAPPLSTQHHGEGAIPAAAVSGPMSPVVLQAALSRGRVVDG 44
              PAPAPPL   HHG         SGP  P++    LS GRVV G
Sbjct: 331109 PAPAPPL---HHGRA-------SGPAQPILQCFVLSGGRVVKG 331207


>gi|465961630|gb|KB556236.1| Chelonia mydas unplaced genomic scaffold
             scaffold518, whole genome shotgun sequence
          Length = 3169539

 Score = 33.1 bits (74), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 5     APPLSTQHHGEGAIPAAAVSGP 26
             +PP  T+H GEG +P   VSGP
Sbjct: 37474 SPPTQTRHRGEGTVPLPTVSGP 37539


>gi|465979372|gb|KB529134.1| Chelonia mydas unplaced genomic scaffold
               scaffold274, whole genome shotgun sequence
          Length = 5551308

 Score = 33.1 bits (74), Expect = 8.9
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 109     FCSLTGYHHEIYVDP--EREIYKIFGMK 134
               +C LTGYH+ I +D    RE+Y +FG++
Sbjct: 2313331 YCCLTGYHYHISLDS*GPREVYTLFGLR 2313248


  Database: /cursos/BI/genomes/project_2014/Chelonia_mydas/genome.fa
    Posted date:  Oct 18, 2013  5:55 PM
  Number of letters in database: 2,208,393,880
  Number of sequences in database:  140,022
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 679,484,217
Number of Sequences: 140022
Number of extensions: 11019833
Number of successful extensions: 59776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5540
Number of HSP's successfully gapped in prelim test: 424
Number of HSP's that attempted gapping in prelim test: 4830
Number of HSP's gapped (non-prelim): 57147
length of query: 228
length of database: 736,131,293
effective HSP length: 125
effective length of query: 103
effective length of database: 718,628,543
effective search space: 74018739929
effective search space used: 74018739929
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
