TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00002136_2.0 # Protein # Selenoprotein O (SelO) # Softshell
turtle (Pelodiscus sinensis)
         (86 letters)

Database: /cursos/BI/genomes/project_2014/Chelonia_mydas/genome.fa 
           140,022 sequences; 2,208,393,880 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|465971002|gb|KB539796.1| Chelonia mydas unplaced genomic scaf...    35   0.57 
gi|465989247|gb|KB520915.1| Chelonia mydas unplaced genomic scaf...    32   4.8  

>gi|465971002|gb|KB539796.1| Chelonia mydas unplaced genomic scaffold
               scaffold37, whole genome shotgun sequence
          Length = 6717191

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = -3

Query: 1       LAMSLPTLVLLGLRSHFAGTLQE 23
               LAMSLPTLVLL L+ H AG L++
Sbjct: 1479954 LAMSLPTLVLLDLKPHLAGVLED 1479886


>gi|465989247|gb|KB520915.1| Chelonia mydas unplaced genomic scaffold
               scaffold2, whole genome shotgun sequence
          Length = 13050882

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 22      QELQANVALYFSRHWLLPSSELAMFYYRH 50
               QEL  N+ +YF RHW L + ++ ++Y  H
Sbjct: 2784561 QELSKNIYIYFKRHWCL-ADKVCLYYENH 2784644


  Database: /cursos/BI/genomes/project_2014/Chelonia_mydas/genome.fa
    Posted date:  Oct 18, 2013  5:55 PM
  Number of letters in database: 2,208,393,880
  Number of sequences in database:  140,022
  
Lambda     K      H
   0.325    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,680,507
Number of Sequences: 140022
Number of extensions: 3404336
Number of successful extensions: 18441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3801
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 17648
length of query: 86
length of database: 736,131,293
effective HSP length: 61
effective length of query: 25
effective length of database: 727,589,951
effective search space: 18189748775
effective search space used: 18189748775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
