T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=98
*
 BAD AVG GOOD
*
JH126903.1        :  98
SPP00000080_1.0   :  98
cons              :  98

JH126903.1        --------------------------------------SKYDYDL
SPP00000080_1.0   MAAMVAAMVAALRGPSRRFRPRTRALTRGTRGAASAAGGRQSFDL

cons                                                    .: .:**


JH126903.1        IVIGGGSGGLACSKVPLLSSSAPALIFFFFFSGLLLARGLGGTCV
SPP00000080_1.0   LVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV

cons              :***********:* .   ..  *:  :.  *      *******


JH126903.1        NVGCIPKKLMHQAALLGQALKDSRFFGWE----------------
SPP00000080_1.0   NVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAV

cons              *****************  ::*::.:***                


JH126903.1        ---------------------------------------------
SPP00000080_1.0   QNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKAT

cons                                                           


JH126903.1        ------------------------------SDDLFSLNYCPGKTL
SPP00000080_1.0   LLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTS

cons                                            ***:* *: .**** 


JH126903.1        VIGASYVALECAGFLTGLGLDVTVMVRSILLRGFDQEMANKAGEY
SPP00000080_1.0   VPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEH

cons              * .*. ***********:***.***:*** ******:*:. . *:


JH126903.1        METHGVKFIRRFVPTKVKK--------------------------
SPP00000080_1.0   MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTV

cons              **:**.:*::  **:::**                          


JH126903.1        ------------------------RNGKIPANDEEQTNVPYIYAI
SPP00000080_1.0   LWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAI

cons                                      :* ** .: :* *.**:****


JH126903.1        GDILEGKLELTPVAIQAGRLLARRLFGGST---------------
SPP00000080_1.0   GDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVYHAYYKP

cons              **: **: ****.**:**:***:**** *:               


JH126903.1        --------------------------VVGFHVLGPNAGEVTQGFA
SPP00000080_1.0   LEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFA

cons                                        *:*:*.*************


JH126903.1        AAMKCGVTKEVLDVTIGIHPTCAE---------------------
SPP00000080_1.0   LGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSGLEPTVTGCU

cons               .:***.:   :  *:******:*                     


JH126903.1        -
SPP00000080_1.0   G

cons