SelN

1. Fastatranslate:

>JH128433.1 dna:scaffold scaffold:LatCha1:JH128433.1:1:461843:1 REF:[translate(1)]

EEALKSLGNEGLFLFSSLDTDNDLFLSPEEFKPIAEKLMGLAPVPDFEEDEVPDPSGESLTVVAKFQPLL LETMTKSKDGFLGVSHHALDGLQSWRKPQTLTSVFFARQFKAFLPPKNKLEVGDPWWVVPSELNIFTGYL SNNRFYPALPKGKEVIIHNLLSMFHPRPFVKTRFGPQGAVACIRAVSDFYYDIIFRIHSEFQLNEPPGFP FWFSPAQFTGHIVLSKDSSHVREFRLFVPNNRSLNVDMEWLYGTSENSNMEVDIGYLPQMELELVSPSVP TILYDEEGNVIDSQDSSGEPIQFVFEEIKWQSEISWEEAARRLEITMYPFKKVPYLPFTEAFHRAKAENK LVHSILLWGALDDQSCUGSGRTLRETVLESSPVLALLSENFISSWSLVKELEILQNNEENELLAKQASLH LEKYNFPVEMMLCFPNGTVVHHMNANYFLDITSMKPEEMEGGIFSFSAGFEDPSTAMYLKFLKEGLEKAK MFLQPV

2. SECISearch: 1 hit

Pattern: Loose

1 JH128433.1:subseq(77996 15000) dna:scaffold scaffold:LatCha1:JH128433.1:1:461843:1 REF: 1636 1528 (SECIS on complementary strand) upstemen:-10.30 fullstructen: -24.30

UUCUAGAUGG CAGUCUG GUGAUACUGGAGC UUGAA GUGUUUCUAUUU AA CCAUGGAACACUGGGGG AGGGGGGAAUGC AGAU UUCUCCACC CAGCCCUG UACCAGUGU

COVE score: 2.67 (Recommended threshold for COVE: 15)