
genewise output
Score 12.91 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|302058272|re  184 LLEHREKE                                          
                     ++ H+EKE                                          
                     IVRHKEKE                                          
contig173039     173 agacagag                                          
                     ttgaaaaa                                          
                     agacaggg                                          


//
>contig173039.pep
IVRHKEKE
//
>contig173039.[173:196].sp
ATAGTGAGACACAAAGAGAAGGAG
//
contig173039	GeneWise	match	173	196	12.91	+	.	contig173039-genewise-prediction-1
contig173039	GeneWise	cds	173	196	0.00	+	0	contig173039-genewise-prediction-1
//

genewise output
Score 68.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|302058272|re   79 EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK  
                     +EASE+SSL+ QL EL +PL AVVKEN G E+  F+ +FAG ++LD+K  
                     QEASEISSLRSQLQELDIPLLAVVKENKGRELDGFKQYFAGNVYLDQK  
contig173039    -171 cggtgattcatcccgcgacccgggagaagagtggtacttggagtcgca  
                     aaccatcctgcataatatcttcttaaaaggatagtaaatcgatataaa  
                     ggctgcctggcgggagcctcttgcaacgcgagcccggcttgcccgcgg  


//
>contig173039.pep
QEASEISSLRSQLQELDIPLLAVVKENKGRELDGFKQYFAGNVYLDQK
//
>contig173039.[171:26].sp
CAGGAGGCCTCTGAGATCTCCTCTCTGAGGTCCCAGCTGCAGGAACTGGACATCCCTCTC
CTTGCTGTGGTCAAAGAAAACAAGGGCAGGGAATTGGACGGCTTCAAGCAGTACTTTGCT
GGGAACGTCTACCTGGACCAGAAG
//
contig173039	GeneWise	match	171	28	68.43	-	.	contig173039-genewise-prediction-1
contig173039	GeneWise	cds	171	28	0.00	-	0	contig173039-genewise-prediction-1
//

genewise output
Score 56.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|302058272|re   23 TDFLLTKSAPATVDYLANADLKTIDG                        
                     TD  LT+   AT+ +L   DL T+ G                        
                     TDVFLTQPLKATIQHLEETDLTTLSG          D:E[gaa]      
contig370109    1146 aggtcacccagaacctggagcaacagGGTGAGTC  Intron 1      
                     catttcactacctaataacatcctgg <1-----[1225 : 1308]   
                     ctgtctagggtacatggaccgatgca                        


gi|302058272|re   49      ERSLKAKALWEKSGAVIMAVRRPG                     
                           RSLKAK+LW  SGAVIMAVRRPG                     
                          NRSLKAKSLWASSGAVIMAVRRPG                     
contig370109    1306 AAGAAaatcagatctgatgggaaggcccg                     
                     -1>  agctacactgcgcgctttctggcg                     
                          cggcgcaaggaccatccgtctgtg                     


//
Making a E in phase 1 intron
>contig370109.pep
TDVFLTQPLKATIQHLEETDLTTLSGENRSLKAKSLWASSGAVIMAVRRPG
//
>contig370109.[1146:1382].sp
ACCGATGTGTTTCTCACTCAACCGCTGAAGGCTACAATCCAACATTTGGAGGAAACCGAC
CTGACAACTCTGAGCGGAGAAAACAGGTCGCTCAAGGCCAAATCACTGTGGGCAAGCTCC
GGAGCTGTCATCATGGCTGTCCGTCGGCCTGGG
//
contig370109	GeneWise	match	1146	1382	56.36	+	.	contig370109-genewise-prediction-1
contig370109	GeneWise	cds	1146	1224	0.00	+	0	contig370109-genewise-prediction-1
contig370109	GeneWise	intron	1225	1308	0.00	+	.	contig370109-genewise-prediction-1
contig370109	GeneWise	cds	1309	1382	0.00	+	2	contig370109-genewise-prediction-1
//

genewise output
Score 13.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|302058272|re   67 MAVRRPG                                           
                     M +RRPG                                           
                     MQLRRPG                                           
contig370109    -871 accaccg                                           
                     tatggcg                                           
                     ggggaac                                           


//
>contig370109.pep
MQLRRPG
//
>contig370109.[871:849].sp
ATGCAGCTGAGGCGACCAGGC
//
contig370109	GeneWise	match	871	851	13.28	-	.	contig370109-genewise-prediction-1
contig370109	GeneWise	cds	871	851	0.00	-	0	contig370109-genewise-prediction-1
//

genewise output
Score 75.98 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|302058272|re  129 FYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFILGGVFVMG 
                     FYGP++R M    F+R+GVWQN+ RA R G+ GN+ GEG++LGGVFV+G 
                     FYGPRERWMLFSMFLRVGVWQNLWRATRRGFMGNLRGEGLVLGGVFVIG 
contig54147       26 ttgccgctatttatccgggtcactagacagtagacagggcgcgggtgag 
                     tagcgaggtttctttgtgtgaatggccgggttgatggagtttggttttg 
                     tcctagcgggccgcgggggggccggccggccgaccaaaaccagagctcg 


gi|302058272|re  178 SGGQ                                              
                      G Q                                              
                     PGDQ                                              
contig54147      173 cggc                                              
                     cgaa                                              
                     tatg                                              


//
>contig54147.pep
FYGPRERWMLFSMFLRVGVWQNLWRATRRGFMGNLRGEGLVLGGVFVIGPGDQ
//
>contig54147.[26:184].sp
TTTTACGGCCCTCGAGAGCGCTGGATGTTGTTCTCCATGTTCCTGCGGGTGGGGGTGTGG
CAGAACCTCTGGAGGGCCACCCGGAGGGGCTTCATGGGAAACCTCAGAGGAGAAGGACTC
GTCCTAGGGGGAGTGTTCGTTATCGGGCCTGGAGATCAG
//
contig54147	GeneWise	match	26	184	75.98	+	.	contig54147-genewise-prediction-1
contig54147	GeneWise	cds	26	184	0.00	+	0	contig54147-genewise-prediction-1
//

genewise output
Score 9.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|302058272|re   85 SSLKPQLD                                          
                     SS KP  D                                          
                     SSSKPHED                                          
contig54147      -26 attaccgg                                          
                     gccacaaa                                          
                     tctactac                                          


//
>contig54147.pep
SSSKPHED
//
>contig54147.[26:1].sp
AGTTCCTCTAAACCCCATGAAGAC
//
contig54147	GeneWise	match	26	3	9.36	-	.	contig54147-genewise-prediction-1
contig54147	GeneWise	cds	26	3	0.00	-	0	contig54147-genewise-prediction-1
//
