TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|302058272|ref|NP_001180454.1| redox-regulatory protein
FAM213A [Danio rerio]
         (212 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_25 dna:genescaffold genescaffold:gadMor1:GeneScaffo...    86   3e-16
GeneScaffold_1961 dna:genescaffold genescaffold:gadMor1:GeneScaf...    74   1e-12
contig173039 dna:contig contig::contig173039:1:630:1 REF               62   4e-09
contig370109 dna:contig contig::contig370109:1:1419:1 REF              61   1e-08
contig54147 dna:contig contig::contig54147:1:389:1 REF                 53   3e-06

>GeneScaffold_25 dna:genescaffold genescaffold:gadMor1:GeneScaffold_25:1:407012:1 REF
          Length = 407012

 Score = 86.3 bits (212), Expect = 3e-16
 Identities = 40/54 (74%), Positives = 50/54 (92%)
 Frame = +2

Query: 79     EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEKQAFYGP 132
              +EASELSSLKP+L++LGVPL AVVKE++GTE+QDFRPHFAG+I++DEK   YGP
Sbjct: 342110 QEASELSSLKPELEKLGVPLVAVVKEDIGTELQDFRPHFAGDIYIDEK-VHYGP 342268



 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = +1

Query: 129    FYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 170
              FYGP QRKMGG+GF RLGVWQNF+RA R G+QGNM GEGFIL
Sbjct: 342913 FYGPLQRKMGGMGFFRLGVWQNFMRARRGGHQGNMIGEGFIL 343038



 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +3

Query: 53     LKAKALWEKSGAVIMAVRRPGXFLCRE 79
              +KAK+LWE SGAV+MAVRRPG FLCRE
Sbjct: 340941 IKAKSLWEASGAVVMAVRRPG*FLCRE 341021


>GeneScaffold_1961 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1961:1:97936:1 REF
          Length = 97936

 Score = 73.9 bits (180), Expect = 1e-12
 Identities = 35/48 (72%), Positives = 43/48 (89%)
 Frame = +3

Query: 79    EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK 126
             +EA+ELSSLK QLD+LGVPLYAVVKE+VGTE+ +F+P F G+IFLD K
Sbjct: 38556 QEAAELSSLKSQLDQLGVPLYAVVKEDVGTEVLNFQPFFNGDIFLDAK 38699



 Score = 61.6 bits (148), Expect = 7e-09
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +2

Query: 126   KQAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 170
             ++ FYGP++R MG L F+R+GVW N +RA+R G+ GN++GEGFIL
Sbjct: 38888 QRRFYGPRERSMGLLAFLRVGVWTNGLRAFRNGFIGNVSGEGFIL 39022


>contig173039 dna:contig contig::contig173039:1:630:1 REF
          Length = 630

 Score = 62.4 bits (150), Expect = 4e-09
 Identities = 28/48 (58%), Positives = 38/48 (79%)
 Frame = -1

Query: 79  EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK 126
           +EASE+SSL+ QL EL +PL AVVKEN G E+  F+ +FAG ++LD+K
Sbjct: 171 QEASEISSLRSQLQELDIPLLAVVKENKGRELDGFKQYFAGNVYLDQK 28


>contig370109 dna:contig contig::contig370109:1:1419:1 REF
          Length = 1419

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 37/85 (43%), Positives = 42/85 (49%), Gaps = 28/85 (32%)
 Frame = +3

Query: 23   TDFLLTKSAPATVDYLANADLKTIDGDE----------------------------RSLK 54
            TD  LT+   AT+ +L   DL T+ G E                            RSLK
Sbjct: 1146 TDVFLTQPLKATIQHLEETDLTTLSGGESHSYGNVFAASVFGSLFFKLYFIYF*ENRSLK 1325

Query: 55   AKALWEKSGAVIMAVRRPGXFLCRE 79
            AK+LW  SGAVIMAVRRPG FLCRE
Sbjct: 1326 AKSLWASSGAVIMAVRRPG*FLCRE 1400


>contig54147 dna:contig contig::contig54147:1:389:1 REF
          Length = 389

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 129 FYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL 170
           FYGP++R M    F+R+GVWQN  RA R G+ GN+ GEG +L
Sbjct: 26  FYGPRERWMLFSMFLRVGVWQNLWRATRRGFMGNLRGEGLVL 151


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.319    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,162,352
Number of Sequences: 398859
Number of extensions: 1593217
Number of successful extensions: 4844
Number of sequences better than 1.0e-04: 5
Number of HSP's better than  0.0 without gapping: 4162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4844
length of query: 212
length of database: 277,371,529
effective HSP length: 116
effective length of query: 96
effective length of database: 231,103,885
effective search space: 22185972960
effective search space used: 22185972960
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)
