TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63101288|gb|AAH95658.1| Selt2 protein [Danio rerio]
         (64 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_3349 dna:genescaffold genescaffold:gadMor1:GeneScaf...    52   2e-06

>GeneScaffold_3349 dna:genescaffold genescaffold:gadMor1:GeneScaffold_3349:1:39016:1 REF
          Length = 39016

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
 Frame = -1

Query: 1     MAEYSQTGIXXXXXXXXXXXXKDIYVGRNSVTQQ-----ENTG------PDINTQRQNKH 49
             MAEY+Q GI            +DIYVGR+   QQ     E+ G      PD  T +  K 
Sbjct: 15205 MAEYTQKGILTAVLFFSAITLRDIYVGRSQTQQQGPQASESLGMASDSLPDAGTVKPGKP 15026

Query: 50    TFYTGPVLKFQY 61
             + YTGPVLKFQY
Sbjct: 15025 SLYTGPVLKFQY 14990


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.315    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,444,120
Number of Sequences: 398859
Number of extensions: 365959
Number of successful extensions: 1834
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of query: 64
length of database: 277,371,529
effective HSP length: 38
effective length of query: 26
effective length of database: 262,214,887
effective search space: 6817587062
effective search space used: 6817587062
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)
