TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34784792|gb|AAH53147.2| Selenoprotein T, 1b [Danio rerio]
         (163 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_2072 dna:genescaffold genescaffold:gadMor1:GeneScaf...    71   5e-12
GeneScaffold_3349 dna:genescaffold genescaffold:gadMor1:GeneScaf...    55   3e-07

>GeneScaffold_2072 dna:genescaffold genescaffold:gadMor1:GeneScaffold_2072:1:100941:1 REF
          Length = 100941

 Score = 71.2 bits (173), Expect = 5e-12
 Identities = 30/44 (68%), Positives = 37/44 (84%)
 Frame = +1

Query: 51    RHIASFLSVFKLVVIGLIILGKNPFTYLHIETPGIWLWAQENKI 94
             RHIA+FLS FKLVVIGLII+GK+PF  L ++ PG+W W QENK+
Sbjct: 78478 RHIATFLSTFKLVVIGLIIIGKDPFALLGMQAPGVWTWGQENKV 78609



 Score = 71.2 bits (173), Expect = 5e-12
 Identities = 34/40 (85%), Positives = 38/40 (95%), Gaps = 1/40 (2%)
 Frame = +3

Query: 123   DVPVWSKLQSGHLPSMQQLVQILENEMKLSVHMDSL-PHR 161
             DVPVWSKL+SG LPSMQQLVQILENEMK++VHMD+L PHR
Sbjct: 80082 DVPVWSKLESGQLPSMQQLVQILENEMKMNVHMDTLSPHR 80201



 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +1

Query: 15    VSXGYRRVFEEYTRVLTQRYPDIRIEGENFLPQPLYR 51
             +S GY+RVFEEY + L QRYPDIRIEGEN+LP PLYR
Sbjct: 76702 IS*GYKRVFEEYMQALNQRYPDIRIEGENYLPMPLYR 76812



 Score = 57.0 bits (136), Expect = 9e-08
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +2

Query: 93    KIYACTMVFFLSNMIENQCMSTGAFEVTLNDVP 125
             +IYAC MVFF SNMIENQ MSTGAFE+TLN  P
Sbjct: 79829 QIYACMMVFFFSNMIENQMMSTGAFEITLNGEP 79927


>GeneScaffold_3349 dna:genescaffold genescaffold:gadMor1:GeneScaffold_3349:1:39016:1 REF
          Length = 39016

 Score = 55.5 bits (132), Expect = 3e-07
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = -1

Query: 44    FLPQPLYRHI---ASFLSVFKLVVIGLIILGKNPFTYLHIETPGIWLWAQENKI 94
             + P PL  HI    +F + FKL+ I L++ G+NPF  L + TP  W+W+QENK+
Sbjct: 13885 YQPYPLVHHIRYLGNFFAYFKLLAITLVVSGQNPFPILGLATPRAWVWSQENKV 13724



 Score = 50.8 bits (120), Expect = 7e-06
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -3

Query: 15    VSXGYRRVFEEYTRVLTQRYPDIRIEGENFLPQPLYR 51
             +S GY +V++EY+R ++Q YPDIRIEGEN+ P P  R
Sbjct: 14192 IS*GYSKVYQEYSRAISQLYPDIRIEGENYPPTPTNR 14082


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.327    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,532,610
Number of Sequences: 398859
Number of extensions: 2659929
Number of successful extensions: 13721
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 10362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13715
length of query: 163
length of database: 277,371,529
effective HSP length: 112
effective length of query: 51
effective length of database: 232,699,321
effective search space: 11867665371
effective search space used: 11867665371
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)
