
genewise output
Score 245.30 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|34784792|gb|   18 GYRRVFEEYTRVLTQRYPDIRIEGENFLPQPLY                 
                     GY+RVFEEY + L QRYPDIRIEGEN+LP PLY                 
                     GYKRVFEEYMQALNQRYPDIRIEGENYLPMPLY                 
GeneScaffold_2010009 gtacgtggtacgtacctcgacagggatccacct                 
                     gaagttaaatactaagacatgtagaaatctcta                 
                     gtgggtggcggcgcggtgccctgagcctagcct                 


gi|34784792|gb|   51                           HIASFLSVFKLVVIGLIILGKNP 
                                               HIA+FLS FKLVVIGLII+GK+P 
                                R:R[cga]       HIATFLSTFKLVVIGLIIIGKDP 
GeneScaffold_2010108 CGGTAAGAA  Intron 1   CAGAcagatctatacggagcaaagagc 
                       <2-----[10110:11777]-2> atccttcctattttgttttgaac 
                                               cttacgcttggggtgttacaaca 


gi|34784792|gb|   75 FTYLHIETPGIWLWAQENK                       IYACTMV 
                     F  L ++ PG+W W QENK                       IYAC MV 
                     FALLGMQAPGVWTWGQENK                       IYACMMV 
GeneScaffold_2011848 tgctgacgcggtatgcgaaGTAGGAA  Intron 2   CAGatgtaag 
                     tcttgtaccgtgcggaaaa<0-----[11905:13129]-0>tacgttt 
                     ctcgtgactcggtgaggtg                       atccggg 


gi|34784792|gb|  101 FFLSNMIENQCMSTGAFEVTLN                          V 
                     FF SNMIENQ MSTGAFE+TLN                          V 
                     FFFSNMIENQMMSTGAFEITLN          D:D[gac]        V 
GeneScaffold_2013151 tttaaaagacaataggtgaataGGTGAGCC  Intron 3   CAGACg 
                     tttgattaaattccgctatcta <1-----[13218:13380]-1>  t 
                     tccccgtacagggaactacggc                          g 


gi|34784792|gb|  125 PVWSKLQSGHLPSMQQLVQILENEMKLSVHMDSL-PHR            
                     PVWSKL+SG LPSMQQLVQILENEMK++VHMD+L PHR            
                     PVWSKLESGQLPSMQQLVQILENEMKMNVHMDTLSPHR            
GeneScaffold_2013386 cgttacgtgccctacccgcacgagaaaagcagactccc            
                     ctgcatacgatcctaattattaaatatatatactccag            
                     gggtgggccagccggggtgcggcggggctcgcagggcc            


//
Making a R in phase 2 intron
Making a D in phase 1 intron
>GeneScaffold_2072:subseq(66702,25000).pep
GYKRVFEEYMQALNQRYPDIRIEGENYLPMPLYRHIATFLSTFKLVVIGLIIIGKDPFAL
LGMQAPGVWTWGQENKIYACMMVFFFSNMIENQMMSTGAFEITLNDVPVWSKLESGQLPS
MQQLVQILENEMKMNVHMDTLSPHR
//
>GeneScaffold_2072:subseq(66702,25000).[10009:13499].sp
GGGTATAAGCGGGTGTTTGAGGAGTACATGCAGGCCTTGAACCAGCGGTATCCGGACATC
CGCATTGAGGGAGAGAACTACCTTCCAATGCCCCTCTATCGACACATTGCTACATTCCTG
TCCACTTTTAAGCTGGTGGTGATTGGGCTTATTATAATCGGAAAAGACCCATTCGCTCTC
TTGGGTATGCAAGCCCCTGGCGTGTGGACTTGGGGACAGGAGAATAAGATATATGCCTGC
ATGATGGTGTTTTTCTTCAGCAACATGATTGAAAACCAAATGATGTCGACAGGAGCCTTT
GAAATCACGTTGAACGACGTGCCGGTGTGGTCTAAGCTGGAGTCCGGCCAACTGCCCTCC
ATGCAGCAGCTGGTTCAGATCCTGGAGAACGAGATGAAGATGAACGTTCACATGGACACA
CTGTCGCCGCACCGC
//
GeneScaffold_2072:subseq(66702,25000)	GeneWise	match	10009	13499	245.30	+	.	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	cds	10009	10109	0.00	+	0	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	intron	10110	11777	0.00	+	.	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	cds	11778	11904	0.00	+	1	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	intron	11905	13129	0.00	+	.	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	cds	13130	13217	0.00	+	0	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	intron	13218	13380	0.00	+	.	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	cds	13381	13499	0.00	+	2	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
//

genewise output
Score 15.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|34784792|gb|  113 STGAFEVTLNDVPV                                    
                     STGAF  T +  P+                                    
                     STGAFRATCDACPL                                    
GeneScaffold_2-14789 taggtagatggtcc                                    
                     ccgctgccgacgct                                    
                     catccgttttgtta                                    


//
>GeneScaffold_2072:subseq(66702,25000).pep
STGAFRATCDACPL
//
>GeneScaffold_2072:subseq(66702,25000).[14789:14746].sp
TCCACAGGTGCCTTCAGGGCTACTTGTGATGCGTGTCCTCTA
//
GeneScaffold_2072:subseq(66702,25000)	GeneWise	match	14789	14748	15.67	-	.	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
GeneScaffold_2072:subseq(66702,25000)	GeneWise	cds	14789	14748	0.00	-	0	GeneScaffold_2072:subseq(66702,25000)-genewise-prediction-1
//
