TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34784699|gb|AAH54578.2| Selenoprotein T, 1a [Danio rerio]
         (163 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_2072 dna:genescaffold genescaffold:gadMor1:GeneScaf...    78   4e-14
GeneScaffold_3349 dna:genescaffold genescaffold:gadMor1:GeneScaf...    52   4e-06

>GeneScaffold_2072 dna:genescaffold genescaffold:gadMor1:GeneScaffold_2072:1:100941:1 REF
          Length = 100941

 Score = 78.2 bits (191), Expect = 4e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +3

Query: 123   DVPVWSKLESGHLPSMQQLVQILENEMKMSMHMDTLPPHQS 163
             DVPVWSKLESG LPSMQQLVQILENEMKM++HMDTL PH+S
Sbjct: 80082 DVPVWSKLESGQLPSMQQLVQILENEMKMNVHMDTLSPHRS 80204



 Score = 70.5 bits (171), Expect = 8e-12
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +1

Query: 15    VSXGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYR 51
             +S GYKRVFEEY QAL QRYPDIRIEGENYLP+PLYR
Sbjct: 76702 IS*GYKRVFEEYMQALNQRYPDIRIEGENYLPMPLYR 76812



 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +2

Query: 76    ALCGMQAPGIWVWSQENKIYACMMVFFFSNMIENQCMSTGAFEITLNDVP 125
             ++  +Q+  + ++ +  +IYACMMVFFFSNMIENQ MSTGAFEITLN  P
Sbjct: 79778 SMVALQSMDL*LFGRLFQIYACMMVFFFSNMIENQMMSTGAFEITLNGEP 79927



 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 29/48 (60%), Positives = 33/48 (68%)
 Frame = +1

Query: 47    LPLYRHIASFLSMFKXXXXXXXXXXKDPFALCGMQAPGIWVWSQENKI 94
             +PL RHIA+FLS FK          KDPFAL GMQAPG+W W QENK+
Sbjct: 78469 IPL-RHIATFLSTFKLVVIGLIIIGKDPFALLGMQAPGVWTWGQENKV 78609


>GeneScaffold_3349 dna:genescaffold genescaffold:gadMor1:GeneScaffold_3349:1:39016:1 REF
          Length = 39016

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = -3

Query: 15    VSXGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYR 51
             +S GY +V++EY++A+ Q YPDIRIEGENY P P  R
Sbjct: 14192 IS*GYSKVYQEYSRAISQLYPDIRIEGENYPPTPTNR 14082



 Score = 47.4 bits (111), Expect = 7e-05
 Identities = 23/52 (44%), Positives = 34/52 (65%)
 Frame = -3

Query: 101  FFFSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILENEMKMS 152
            FFF  M    CM          DVP+WSKL+SG++P++Q++ QIL+N +KM+
Sbjct: 2114 FFFY*MYLLPCMCA--------DVPIWSKLQSGYVPNVQEVFQILDNHIKMN 1983



 Score = 47.0 bits (110), Expect = 9e-05
 Identities = 25/58 (43%), Positives = 34/58 (58%)
 Frame = -1

Query: 74   PFALCGMQAPGIWVWSQENKIYACMMVFFFSNMIENQCMSTGAFEITLNDVPVWSKLE 131
            P ALC      + V+    +I++C+M FF SNM+E   +STGAFEI LN     + LE
Sbjct: 3397 PLALCSSFRHDVCVF----QIFSCLMAFFLSNMLETHFLSTGAFEIMLNGTYNLTSLE 3236


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.325    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,072,593
Number of Sequences: 398859
Number of extensions: 2309019
Number of successful extensions: 12144
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 9380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12139
length of query: 163
length of database: 277,371,529
effective HSP length: 112
effective length of query: 51
effective length of database: 232,699,321
effective search space: 11867665371
effective search space used: 11867665371
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)
