
genewise output
Score 135.34 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|168823481|re   22 SFLQPSVTAFMSEYGWYLLFGCVGVYLLIQHLRKSRS-STQTRSSSGSA 
                     +FL  +   +++EYGW+LLF  V + +LIQ+L K R+     RSS+ +A 
                     NFLFLTAEEILAEYGWHLLFLTVCIIVLIQYLSKKRAIQVSKRSSNETA 
GeneScaffold_28  478 atctcagggacggtgtccctcagtaagcactcaaaagacgaacttagag 
                     attttccaattcaaggattttctgtttttaatgaagctatgagccaacc 
                     tccttaaggtgtgtggcgccgtctctagcgcgtggaacgccgccttaga 


gi|168823481|re   70 E                          ---AHDVGSVVRRQEALEASRR 
                     +                               D   +VRRQEALEASRR 
                     Q          -:G[ggc]        FFPFEDPALIVRRQEALEASRR 
GeneScaffold_28  625 cGGTGAGTC  Intron 1   AAGGCttctggcgcagaacggcggtaa 
                     a <1-----[629  :  982]-1>  ttctaacctttggaactaccgg 
                     a                          tcgtacatgcgagagctaccga 


gi|168823481|re   90 RMQEEQDARAAEFREKQRM                       LEEEKRR 
                     R+QE+ DA+AAE++EKQ+                        LEEEKR+ 
                     RLQEDLDAKAAEYKEKQKK                       LEEEKRK 
GeneScaffold_28 1051 accggcggagggtagacaaGTAAATA  Intron 2   CAGcgggaaa 
                     gtaaatacaccaaaaaaaa<0-----[1108 : 1219]-0>taaaaga 
                     aggacctcacaacggggag                       ggagagg 


gi|168823481|re  116 QKIEMWDSMQEGKSYKGSAKVAQQNTEEA                     
                     QKIE+W+SMQEGKSYK  AK + Q                          
                     QKIEIWESMQEGKSYK--AKNSSQVAVSC                     
GeneScaffold_28 1241 caagatgaacggaata  gaattcgggat                     
                     aatatgagtaagagaa  caaccatctgg                     
                     gataagacgagagcca  cgtttgagctc                     


gi|168823481|re  145                           ASSSSLRPKTEKKPLRSS      
                                                SS  L+PK++ K LR S      
                                -:C[tgc]       SSSGVLKPKSDNK-LRGS      
GeneScaffold_28 1322 TGGTTAGGA  Intron 3   CAGCtttggcacaagaa ccgt      
                       <2-----[1324 : 1411]-2> cccgttacagaaa tggc      
                                               agcgcgaagcctg caca      


gi|168823481|re  163                           YSPLSGDAGGSCSWRPGRRGPSA 
                                               Y+PL+GD G S SWRPGRRGP++ 
                               G:G[ggc]        YNPLAGDGGASVSWRPGRRGPTS 
GeneScaffold_28 1464 GGTTTGTA  Intron 4   CAGGCtactggggggtgatacgaagcat 
                      <1-----[1465 : 2187]-1>  aactcgaggcctgggcggggccc 
                                               cccgtaccagtccgaagggcggg 


gi|168823481|re  187 GG                                                
                     GG                                                
                     GG                                                
GeneScaffold_28 2259 gg                                                
                     gg                                                
                     ta                                                


//
Making a G in phase 1 intron
Making a C in phase 2 intron
Making a G in phase 1 intron
>GeneScaffold_2852:subseq(94531,21000).pep
NFLFLTAEEILAEYGWHLLFLTVCIIVLIQYLSKKRAIQVSKRSSNETAQGFFPFEDPAL
IVRRQEALEASRRRLQEDLDAKAAEYKEKQKKLEEEKRKQKIEIWESMQEGKSYKAKNSS
QVAVSCCSSSGVLKPKSDNKLRGSGYNPLAGDGGASVSWRPGRRGPTSGG
//
>GeneScaffold_2852:subseq(94531,21000).[478:2264].sp
AATTTCCTCTTTCTTACAGCAGAGGAGATTCTGGCTGAGTATGGGTGGCACCTGCTCTTC
CTGACTGTCTGTATCATTGTACTGATCCAGTACCTGAGTAAGAAGAGAGCAATCCAGGTC
AGCAAGCGCTCCTCTAATGAAACGGCACAAGGCTTTTTCCCGTTTGAAGACCCAGCTCTG
ATCGTGAGAAGGCAAGAGGCCCTTGAAGCCTCCAGGAGAAGACTGCAGGAAGACCTCGAT
GCCAAAGCCGCAGAATACAAGGAGAAGCAGAAAAAGCTGGAGGAAGAGAAAAGGAAGCAG
AAAATTGAAATATGGGAAAGCATGCAAGAGGGAAAGAGCTACAAAGCCAAGAATTCTTCT
CAGGTAGCGGTCAGTTGCTGCTCATCGTCCGGGGTCCTGAAACCAAAGAGCGACAATAAG
CTCCGAGGCTCAGGCTACAACCCCTTGGCTGGAGACGGCGGAGCGTCTGTCAGCTGGAGA
CCAGGGAGGAGGGGCCCGACGTCGGGTGGA
//
GeneScaffold_2852:subseq(94531,21000)	GeneWise	match	478	2264	138.33	+	.	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	cds	478	628	0.00	+	0	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	intron	629	982	0.00	+	.	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	cds	983	1107	0.00	+	2	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	intron	1108	1219	0.00	+	.	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	cds	1220	1323	0.00	+	0	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	intron	1324	1411	0.00	+	.	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	cds	1412	1464	0.00	+	1	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	intron	1465	2187	0.00	+	.	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	cds	2188	2264	0.00	+	2	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
//

genewise output
Score 27.56 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|168823481|re   75 GSVVRRQEALEASRRRMQEEQDARAAEFREKQRMLEEEK--RRQKIE   
                     G++V +   + AS R ++ EQ  R    RE+ R  E E+  RR+K+E   
                     GAIVPKHRGIVASERAQEGEQRERKGMERERARKRERERWGRRKKME   
GeneScaffold_2-16173 ggagcacagaggtgcgcgggcagaagagagcgaaagagatgaaaaag   
                     gcttcaaggttccagcaagaagagagtagagcgagagagggggaata   
                     tcctcgcagaaatggcgaagaggaaaggggaaggagaaggtgagaga   


//
>GeneScaffold_2852:subseq(94531,21000).pep
GAIVPKHRGIVASERAQEGEQRERKGMERERARKRERERWGRRKKME
//
>GeneScaffold_2852:subseq(94531,21000).[16173:16031].sp
GGTGCCATCGTTCCCAAGCACAGAGGGATAGTAGCATCTGAGCGGGCCCAGGAAGGAGAG
CAAAGGGAGAGAAAAGGAATGGAGAGGGAGCGAGCAAGGAAGAGAGAGAGAGAAAGGTGG
GGTAGGAGAAAGAAAATGGAA
//
GeneScaffold_2852:subseq(94531,21000)	GeneWise	match	16173	16033	28.56	-	.	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
GeneScaffold_2852:subseq(94531,21000)	GeneWise	cds	16173	16033	0.00	-	0	GeneScaffold_2852:subseq(94531,21000)-genewise-prediction-1
//
