
genewise output
Score 162.84 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|285026514|re  112 YLSGSKVMPGSEPAAHCYCGHQ                       FGQF 
                     Y+SG++++PGS P AH Y GHQ                       FG + 
                     YVSGAELIPGSIPLAHRYGGHQ                       FGYW 
GeneScaffold_1114279 tgagggcacgtactgcctggccGTAAAAC  Intron 1   CAGtgtt 
                     atggcattcgctctcagaggaa<0-----[14345:14522]-0>tgag 
                     tccttacattatcgacacaacg                       tccg 


gi|285026514|re  138 AGQLGDGAACYLGEVKA                          AGQSPE 
                     +GQLGDG A  LG+                              G+    
                     SGQLGDGRAHLLGQYTN           P:R[aga]       KGEI-- 
GeneScaffold_1114535 tgctgggagcccgctaaAGGTGGGTC  Intron 2   CAGAagga   
                     cgatgaggcattgaaca  <2-----[14588:14680]-2> agat   
                     ttgaatgatcgtcgtcc                          ataa   


gi|285026514|re  162 LLRENPTGRWEIQVKGAGLTPYS                           
                              WE+Q+KG+G TPYS                           
                     ---------WELQLKGSGKTPYS           R:R[agg]        
GeneScaffold_1114694          tgcccagtgaacttAGGTAGTGC  Intron 3   CAGG 
                              gatatagcgaccac  <2-----[14738:14994]-2>  
                              gaagcacgcaaata                           


gi|285026514|re  186 QADGRKVLRSSIREFLCSEAVFALGVPTTRAG                  
                       DGR V+RSS+REFLCSEA+ ALG+ T+RA                   
                     AGDGRAVVRSSVREFLCSEAMQALGIATSRAA                  
GeneScaffold_1114996 ggggcgggcttgagtctaggacgcgagaaagg                  
                     cgaggcttgcctgattggactactgtccggcc                  
                     tatttgggtgccagcgctacggtgctcccacc                  


gi|285026514|re  218                           VVTSDSRVMRDIFYDGNPRMER  
                                               +V S+  V RD FYDGN R ER  
                                S:S[agt]       LVVSEESVWRDQFYDGNVRKER  
GeneScaffold_1115092 AGGTAGGAG  Intron 4   TAGTcggaggtgtagcttggagaaga  
                       <2-----[15094:15313]-2> tttgaactggaataagatgaag  
                                               gggcgggtgatgctcacggaga  


gi|285026514|re  241                           SVVLRIAPSFIRFGSFEIFKRAD 
                                               +VVLR+A +++R+GS+E++ R   
                               C:G[gga]        AVVLRLARTWFRIGSLEVLTRGG 
GeneScaffold_1115381 GGTACAGT  Intron 5   CAGGAgggcacgaattcagtcggtacgg 
                      <1-----[15382:15515]-1>  ctttgtcgcgtgtgctattcggg 
                                               tatcaacgcgcccacggcgcatg 


gi|285026514|re  265 EFTGR                          GPSYGHDELRTQMLEYVI 
                     E+                              P  G   +R    + ++ 
                     ELDLL           Q:S[agc]       SP--GVVRVRGLASQQLF 
GeneScaffold_1115587 gcgccAGGTCAGGA  Intron 6   CAGCtc  gggagagcgtccct 
                     atatt  <2-----[15604:16013]-2> cc  gttgtggtccaatt 
                     aatgc                          gg  aatgtgtttgaaac 


gi|285026514|re  289 ENFYPEIHRNYPDLTERNTAFFKEVTVRTARLVAQWQCVGFCH       
                      + Y      Y  +   +  F+  V   TA L+AQW  VGF H       
                     NSNY------YNKIFPSSKVFYSTVVRETAHLIAQWMAVGFAH       
GeneScaffold_1116063 atat      taaatcttagtttaggagagccagctagggtgc       
                     acaa      aaattcccattaccttgaccattcagtctgtca       
                     ttct      ccaatcaagatttgtcgaatcaccgggtcctat       


gi|285026514|re  332                           VLNTDNMSILGLTLDYGPFGFMD 
                                               V NTDN+S+L +T+DYGPFGFM+ 
                               G:G[ggg]        VCNTDNFSLLSITIDYGPFGFME 
GeneScaffold_1116174 GGTGAGTG  Intron 7   CAGGGgtaagatacctaaagtgctgtag 
                      <1-----[16175:16265]-1>  tgacaatgttctctaagctgtta 
                                               cccaccccgcccccccattccgg 


gi|285026514|re  356 RFDP                          FICNASDNSGRYSYQAQPA 
                      +DP                          F+ N SD+ GRYS  AQ   
                     SYDP          D:N[aat]        FVPNTSDDEGRYSIGAQAD 
GeneScaffold_1116337 ttgcAGTAAATA  Intron 8   CAGATtgcaatggggctaaggcgg 
                     caac <1-----[16350:16817]-1>  ttcaccaaaggagtgcaca 
                     cccg                          tccccaccgcccccaggtc 


gi|285026514|re  380 ICRWNLARLAEALEPDL                                 
                     +  +NL +L E+L+P L                                 
                     VGLFNLEKLLESLQPVL                                 
GeneScaffold_1116877 ggctacgaccgtcccgc                                 
                     tgttataattactactt                                 
                     gtgccgggtaacggccc                                 


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a S in phase 2 intron
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a G in phase 1 intron
Making a N in phase 1 intron
>GeneScaffold_1108:subseq(138190,20000).pep
YVSGAELIPGSIPLAHRYGGHQFGYWSGQLGDGRAHLLGQYTNRKGEIWELQLKGSGKTP
YSRAGDGRAVVRSSVREFLCSEAMQALGIATSRAASLVVSEESVWRDQFYDGNVRKERGA
VVLRLARTWFRIGSLEVLTRGGELDLLSSPGVVRVRGLASQQLFNSNYYNKIFPSSKVFY
STVVRETAHLIAQWMAVGFAHGVCNTDNFSLLSITIDYGPFGFMESYDPNFVPNTSDDEG
RYSIGAQADVGLFNLEKLLESLQPVL
//
>GeneScaffold_1108:subseq(138190,20000).[14279:16927].sp
TATGTCAGCGGTGCTGAACTCATACCTGGTTCAATTCCCTTGGCACACCGATACGGAGGA
CACCAGTTTGGCTACTGGTCTGGTCAGTTAGGAGATGGGAGAGCTCACCTGCTTGGCCAG
TATACCAACAGAAAAGGTGAAATATGGGAACTACAGCTCAAAGGCTCGGGCAAAACACCA
TATTCAAGGGCTGGAGATGGTCGTGCGGTGGTGCGTTCGTCCGTCAGAGAGTTCCTGTGC
AGTGAAGCCATGCAGGCTCTGGGCATTGCCACCAGCAGAGCCGCCAGTCTGGTGGTGAGC
GAGGAGTCGGTTTGGAGAGATCAGTTCTATGACGGAAACGTGAGGAAAGAGAGAGGAGCT
GTAGTTCTCAGACTAGCCAGGACCTGGTTCCGCATCGGATCCCTGGAGGTCTTGACCCGA
GGTGGGGAACTAGATCTGCTCAGCTCGCCGGGAGTAGTTAGGGTTAGGGGTCTTGCTTCG
CAACAACTATTCAATTCTAACTATTACAACAAAATATTTCCCTCATCAAAGGTATTTTAT
TCTACGGTTGTCAGGGAAACAGCTCACCTAATCGCCCAGTGGATGGCTGTCGGCTTTGCA
CATGGGGTCTGCAACACAGACAACTTCAGCCTGCTCTCCATCACCATCGACTACGGACCT
TTTGGCTTCATGGAGTCCTACGACCCGAATTTTGTCCCCAACACCTCAGACGACGAGGGC
CGCTACAGCATCGGAGCGCAGGCTGACGTGGGTCTGTTCAACCTGGAGAAGCTTCTAGAA
TCCCTGCAGCCCGTCCTC
//
GeneScaffold_1108:subseq(138190,20000)	GeneWise	match	14279	16927	178.82	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	14279	14344	0.00	+	0	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	14345	14522	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	14523	14587	0.00	+	0	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	14588	14680	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	14681	14737	0.00	+	1	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	14738	14994	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	14995	15093	0.00	+	1	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	15094	15313	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	15314	15381	0.00	+	1	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	15382	15515	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	15516	15603	0.00	+	2	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	15604	16013	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	16014	16174	0.00	+	1	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	16175	16265	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	16266	16349	0.00	+	2	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	intron	16350	16817	0.00	+	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	16818	16927	0.00	+	2	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
//

genewise output
Score 20.49 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|285026514|re  413 NDFYLSNMRKKLGLLRKEEPEDE                           
                     N++Y +N + K+G+ R +E  D+                           
                     NNIYKTNNQSKVGIPRAQEESDQ                           
GeneScaffold_1-17205 aaataaaactaggacagcggagc                           
                     aataacaaacatgtcgcaaagaa                           
                     ccatgatcgtataaaataaacta                           


//
>GeneScaffold_1108:subseq(138190,20000).pep
NNIYKTNNQSKVGIPRAQEESDQ
//
>GeneScaffold_1108:subseq(138190,20000).[17205:17135].sp
AACAACATATATAAGACAAATAACCAGTCTAAAGTTGGAATACCAAGAGCTCAAGAAGAA
AGCGATCAA
//
GeneScaffold_1108:subseq(138190,20000)	GeneWise	match	17205	17137	20.49	-	.	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
GeneScaffold_1108:subseq(138190,20000)	GeneWise	cds	17205	17137	0.00	-	0	GeneScaffold_1108:subseq(138190,20000)-genewise-prediction-1
//
