
genewise output
Score 15.84 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|285026514|re  297 RNYPDLTERN                                        
                     R YP++T++N                                        
                     RAYPEVTKKN                                        
GeneScaffold_26 1745 agtcggaaaa                                        
                     gcacatcaaa                                        
                     ggctgctaac                                        


//
>GeneScaffold_2640:subseq(358415,20542).pep
RAYPEVTKKN
//
>GeneScaffold_2640:subseq(358415,20542).[1745:1774].sp
AGGGCGTACCCTGAGGTCACTAAAAAAAAC
//
GeneScaffold_2640:subseq(358415,20542)	GeneWise	match	1745	1774	15.84	+	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	1745	1774	0.00	+	0	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
//

genewise output
Score 987.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|285026514|re    1 MASVGSRLTRFYISRPGVIARRFLAHAGMDDMGVSLSRSSLERLEFDNV 
                     MA +G RL +  I R  V+AR +     MD MGVS+SRS L+ LEFDNV 
                     MAYLGPRLLQPNILRAVVVARLI----AMDSMGVSMSRSPLDHLEFDNV 
GeneScaffold_2-10542 agttgcctcccaaccgggggaca    gagaaggtaactccgccgtgag 
                     tcatgcgttacattgctttcgtt    ctagtgtctggcctaatataat 
                     gttaattgaaattcctgttcaac    cgctgtaggctgagtttgtctc 


gi|285026514|re   50 ALKKLPLDPSTEPGVRQVRGSCFSRVQPTPLKNPEFVAVSAPALALLGL 
                      L++LPLD S EPGVR V+G+CFS+++PTP+  P FVAVS  AL+LLGL 
                     VLRRLPLDSSEEPGVRMVKGACFSKMKPTPVTKPRFVAVSNKALSLLGL 
GeneScaffold_2-10407 gcaacccgttggcggcagaggtttaaacacgaacatgggtaagcttcgc 
                     ttggtctaccaacgtgttagcgtcataccctcacgttctcaactcttgt 
                     acagtagtggaaccgagagagctcagggatgcatacatcatgctggcgc 


gi|285026514|re   99 DAEEVLKDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAAC 
                     +  EV+ DPLGPEYLSGSKVMPGSEPAAHCYCGHQFG FAGQLGDGAAC 
                     NGAEVMSDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGSFAGQLGDGAAC 
GeneScaffold_2-10260 aggggaagccgcgtcagtagacgtgcggctttgcctgttggccgggggt 
                     agcattgactgcaatggcattcgcacccagaggaatgctcgatgagccg 
                     cgaacgtcctcaatgtacaggtatgctcccctacgtggttagactgatt 


gi|285026514|re  148 YLGEVKAPAGQSPELLRENPTGRWEIQVKGAGLTPYS             
                     YLGEVKAP  QS EL  ENP+GRWEIQVKGAG TP+S             
                     YLGEVKAPTDQSAELRHENPSGRWEIQVKGAGKTPFS             
GeneScaffold_2-10113 ttgggagcagcaggcccgacagctgacgagggaactt             
                     atgatacccaagcatgaaacggggatatagcgacctc             
                     cacggatactgtcagttatatcgggcgggctggctta             


gi|285026514|re  185                           QADGRKVLRSSIREFLCSEAVFA 
                                               QADGRKVLRSSIREFLCSEA+FA 
                                R:R[aga]       QADGRKVLRSSIREFLCSEAIFA 
GeneScaffold_2-10002 AGGTTTGTC  Intron 1   TAGAcgggcagcctaacgtctaggatg 
                       <2-----[10000: 9892]-2> acaggattgcgtgattggacttc 
                                               attttggccctaggtactgcccc 


gi|285026514|re  209 LGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVVLRIAPSFI      
                     LG+PTTRAGSVVTSDS+V+RDI YDGN   ERCS+VLRIAP+F+      
                     LGIPTTRAGSVVTSDSKVIRDINYDGNAIHERCSMVLRIAPTFL      
GeneScaffold_26-9821 tgacaaaggtggatgaagacgaatggagacgattagccagcatc      
                     tgtcccgcgcttccagattgataaagactaaggctttgtccctt      
                     gtttccaaagggttccgctacacctgcgtcgactgtattggccc      


gi|285026514|re  253                           FGSFEIFKRADEFTGRQGPSYGH 
                                               FGSFEIFKRADE +GRQGPSYGH 
                                R:R[agg]       FGSFEIFKRADENSGRQGPSYGH 
GeneScaffold_26-9689 AGGTTCGTT  Intron 2   CAGGtgttgataagggatgccgcatgc 
                       <2-----[9687 : 8758]-2> tgctattagcaaacggagcgaga 
                                               tgctgccggatgccgcgtcccac 


gi|285026514|re  277 DELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKE              
                     DE+R QML+YVIE FYPEI +N+ D  ERN AFF+E              
                     DEIRGQMLDYVIETFYPEIQQNHSDRVERNVAFFRE              
GeneScaffold_26-8687 ggaagcacgtgagattcgaccacagcggaaggttag              
                     aatggattaattactacataaaagagtagatcttga              
                     cgcaagggttctgtcttgcggccttgcgacgcccag              


gi|285026514|re  313                        VTVRTARLVAQWQCVGFCHGVLNTDN 
                                            V +RTARLV+QWQCVGFCHGVLNTDN 
                                            VVLRTARLVSQWQCVGFCHGVLNTDN 
GeneScaffold_26-8579 GTATGCT  Intron 3   CAGggccagccgactctggttcggcaaga 
                     <0-----[8579 : 7565]-0>tttgccgttgagagtgtgagttacaa 
                                            gcgtgcccgcgggtcgcccgcgcgcc 


gi|285026514|re  339 MSILGLTLDYGPFGFMD                          FDPDFI 
                     MSILGLTLDYGP+GFMD                          FDPDFI 
                     MSILGLTLDYGPYGFMD           R:R[agg]       FDPDFI 
GeneScaffold_26-7486 aaacgcacgtgctgtagAGGTCTGAT  Intron 4   AAGGtgcgta 
                     tgttgtctaagcagtta  <2-----[7433 : 7054]-2> tacatt 
                     gccgagggcccgcccgc                          ctgtcc 


gi|285026514|re  363 CNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDRAEQVLDEYLPL 
                     CNASDNSGRYSYQAQPAICRWNL +LAEAL P+LP  RA+ VL+EY+ L 
                     CNASDNSGRYSYQAQPAICRWNLGKLAEALAPELPAGRAKAVLEEYMDL 
GeneScaffold_26-7034 tagtgatgctttcgccgatatacgacgggtgcgccggcgaggcggtagc 
                     gaccaacggacaacacctgggatgatcactccatccggcacttaaatat 
                     ctcgccccccacgcgccacggcggggcgggcgggcacccgccggacgcg 


gi|285026514|re  412 YNDFYLSNMRKKLGLLRKEEPEDEMLITELMQTMHNT             
                     YN FYL+ MRKKLGLLRKEEPEDE LIT L+QTM NT             
                     YNGFYLATMRKKLGLLRKEEPEDETLITTLLQTMQNT             
GeneScaffold_26-6887 tagttcgaaaaacgccaaggcgggacaaacccaacaa             
                     aagtatcctgaatgttgaaacaaacttccttactaac             
                     cccccgccgggggcggggggagcgagctacggcggct             


gi|285026514|re  449                           ADFTNTFRSLSQISCPTQEEAED 
                                                DF+NTFR L +I CP+    E  
                                G:R[agg]       !DFSNTFRCLGEIPCPS----EG 
GeneScaffold_26-6776 AGGTGAGAC  Intron 5   CAGG4gttaatctcggactca    gg 
                       <2-----[6774 : 6588]-2>  atcactggtgatcgcg    ag 
                                                ccccgcccgtgccccc    gg 


gi|285026514|re  473 ESETIKQATELLLHQSASLEELKAANRPSMDP                  
                     E   +++AT+LLL Q  SLEEL+ AN+P+M+P                  
                     EQGVVREATDLLLEQCTSLEELRVANKPTMEP                  
GeneScaffold_26-6528 gcgggaggagcccgctatcggcaggaacaagc                  
                     aagttgaccatttaagcctaatgtcaacctac                  
                     ggcgcagcacgggggcccgggcgaccgacgaa                  


gi|285026514|re  505                           ELAMLVSMAQSNPALFQMISDRG 
                                               ELAML+SMAQSNPALFQMISDR  
                                R:R[cga]       ELAMLLSMAQSNPALFQMISDRK 
GeneScaffold_26-6432 CGGTGAGCC  Intron 6   CAGAgcgacctagcaacgctcaatgca 
                       <2-----[6430 : 5463]-2> atctttctcagaccttattcaga 
                                               ggcgggcgcgccgggcggcacgg 


gi|285026514|re  529 TVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQKY            
                     T+ RQLE+L++ +EL +  +E+LR +  + W+DW+  Y            
                     TIGRQLEKLNKTQELAEVNQEELRGQQAQEWTDWVTSY            
GeneScaffold_26-5392 aagcccgacaaacgcgggacggcagccgcgtagtgaat            
                     ctggataataacaatcataaaatggaacaagcagtcga            
                     gtcaggggccgggggggccgggggcggggggccgcccc            


gi|285026514|re  567                           QRLARECESGVDVKDVQTERVRV 
                                               +RLARE E   +V++V  +R+RV 
                                R:R[agg]       KRLARELEGQSNVQEVLDDRLRV 
GeneScaffold_26-5278 AGGTAAAGA  Intron 7   CAGGaccgcgtggcaagcggcggatag 
                       <2-----[5276 : 4880]-2> agtcgatagagataattaagtgt 
                                               gttcagggcattcgaagtcaggg 


gi|285026514|re  591 MNNNNPHVVLRNYIAQNAIAAAENGDFSE                     
                     MN+ NP VVLRNYIAQNAI AAENGDFSE                     
                     MNSTNPRVVLRNYIAQNAIEAAENGDFSE                     
GeneScaffold_26-4809 aaaaaccggcaatagcagaggggaggttgGTGAGTT  Intron 8    
                     tagcacgtttgaatcaactaccaagatca<0-----[4722 : 3179] 
                     gccccgtgccacctcgtatgtagtacctg                     


gi|285026514|re  620    VQRVLKVLEKPFSVQEGLEQPGWMGRGGAAIPGERDETEEEG--SN 
                        VQ+VLKVLE PFS Q  +EQP       A++  E+  ++ +G  S+ 
                        VQQVLKVLEDPFSAQPSVEQP-------ASVGAEQAVSDPQGGVSS 
GeneScaffold_26-3181 TAGgccgcagcggcttgccaggcc       gaggggcggtgccgggtt 
                     -0>taattattaactccacgtaac       cgtgcaactcacaggtcc 
                        cgggggtgatgcgcggtaggt       gtagagatgactaggggc 


gi|285026514|re  664 SSGAGARGLVPYDSKPPVWANEICVT                        
                     ++ A +R +V Y ++PP  A  I V+                        
                     TAAAASRKVVCYHNRPPASATAISVS                        
GeneScaffold_26-3061 aggggtaaggttcaaccgtgagatgt                        
                     ccccccgattgaaagccccccctctc                        
                     ggagccggccccccgagtgcgactct                        


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>GeneScaffold_2640:subseq(358415,20542).pep
MAYLGPRLLQPNILRAVVVARLIAMDSMGVSMSRSPLDHLEFDNVVLRRLPLDSSEEPGV
RMVKGACFSKMKPTPVTKPRFVAVSNKALSLLGLNGAEVMSDPLGPEYLSGSKVMPGSEP
AAHCYCGHQFGSFAGQLGDGAACYLGEVKAPTDQSAELRHENPSGRWEIQVKGAGKTPFS
RQADGRKVLRSSIREFLCSEAIFALGIPTTRAGSVVTSDSKVIRDINYDGNAIHERCSMV
LRIAPTFLRFGSFEIFKRADENSGRQGPSYGHDEIRGQMLDYVIETFYPEIQQNHSDRVE
RNVAFFREVVLRTARLVSQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICN
ASDNSGRYSYQAQPAICRWNLGKLAEALAPELPAGRAKAVLEEYMDLYNGFYLATMRKKL
GLLRKEEPEDETLITTLLQTMQNTRXDFSNTFRCLGEIPCPSEGEQGVVREATDLLLEQC
TSLEELRVANKPTMEPRELAMLLSMAQSNPALFQMISDRKTIGRQLEKLNKTQELAEVNQ
EELRGQQAQEWTDWVTSYRKRLARELEGQSNVQEVLDDRLRVMNSTNPRVVLRNYIAQNA
IEAAENGDFSEVQQVLKVLEDPFSAQPSVEQPASVGAEQAVSDPQGGVSSTAAAASRKVV
CYHNRPPASATAISVS
//
>GeneScaffold_2640:subseq(358415,20542).[10542:6585].sp
ATGGCTTATTTAGGACCTCGTTTGCTACAACCAAATATTCTCCGCGCTGTGGTTGTTGCC
AGACTAATCGCCATGGACAGTATGGGTGTATCGATGAGCCGTTCGCCACTGGATCATCTT
GAGTTTGACAATGTCGTACTCAGAAGGCTTCCACTGGATTCGTCGGAAGAACCCGGCGTG
CGAATGGTAAAGGGAGCGTGCTTTTCCAAAATGAAGCCGACACCTGTGACCAAACCTAGA
TTCGTAGCTGTCTCAAATAAGGCCCTTTCGTTGCTCGGGCTCAACGGGGCAGAAGTCATG
AGTGACCCCCTTGGCCCAGAATATCTGAGTGGATCCAAAGTGATGCCTGGATCTGAGCCC
GCTGCCCACTGCTACTGTGGACACCAGTTTGGGTCGTTTGCTGGACAGCTAGGCGATGGG
GCAGCTTGTTACTTAGGCGAGGTGAAAGCTCCAACCGATCAGAGTGCCGAACTGCGTCAT
GAAAATCCAAGTGGCCGGTGGGAGATCCAGGTGAAGGGCGCTGGGAAGACCCCTTTTTCA
AGACAAGCTGATGGTCGTAAGGTGCTCCGCTCCAGTATACGGGAGTTTCTATGCAGTGAG
GCCATCTTCGCCTTGGGTATTCCTACCACCAGAGCAGGATCGGTGGTGACTTCTGACAGC
AAGGTCATTCGAGACATAAACTACGATGGGAACGCGATTCACGAGAGATGCTCTATGGTT
CTACGTATTGCGCCGACCTTCCTCAGGTTTGGGTCCTTTGAGATCTTCAAGAGGGCAGAT
GAGAACTCCGGGCGCCAGGGTCCCAGCTACGGACACGACGAGATCAGAGGACAGATGCTG
GATTATGTCATTGAGACTTTCTATCCTGAGATCCAGCAGAACCACAGTGATCGGGTCGAG
AGAAACGTGGCCTTCTTCAGAGAGGTGGTCCTGCGTACGGCCCGCCTCGTGAGCCAGTGG
CAGTGTGTCGGGTTCTGCCACGGGGTCCTGAACACGGACAACATGAGCATCCTGGGACTG
ACGCTGGACTACGGCCCGTACGGCTTCATGGACAGGTTCGATCCGGATTTCATCTGCAAT
GCCTCGGACAACTCCGGCCGCTACTCATACCAGGCCCAGCCCGCCATATGCAGGTGGAAC
CTGGGGAAGCTGGCCGAGGCGTTGGCCCCGGAGCTGCCCGCAGGCCGCGCCAAGGCCGTC
CTGGAGGAATACATGGACCTGTACAACGGCTTCTACCTGGCCACCATGAGGAAGAAGCTG
GGCCTGCTGAGGAAGGAGGAGCCAGAGGACGAGACACTGATCACTACACTCCTGCAGACC
ATGCAGAACACTAGG
>GeneScaffold_2640:subseq(358415,20542).[6582:2982].sp
GACTTCTCCAACACGTTCCGCTGCCTGGGTGAGATCCCCTGCCCCAGCGAGGGGGAGCAG
GGCGTGGTCAGAGAGGCCACAGACCTGCTGCTGGAGCAGTGCACCTCCCTGGAGGAGCTC
AGGGTAGCCAACAAGCCAACCATGGAACCACGAGAGCTGGCCATGCTGCTGTCCATGGCC
CAGAGCAACCCGGCGCTGTTCCAGATGATCTCAGACCGGAAGACGATTGGCCGACAGCTG
GAGAAGCTCAACAAGACGCAGGAGCTGGCGGAGGTCAACCAGGAGGAGCTGAGGGGCCAG
CAGGCGCAGGAGTGGACCGACTGGGTCACCAGCTACAGGAAGCGTCTTGCCCGAGAGTTG
GAGGGCCAAAGTAATGTCCAGGAAGTACTGGATGACAGATTGAGGGTGATGAACAGCACC
AACCCGCGTGTGGTCCTCAGAAACTACATTGCCCAGAATGCAATTGAGGCTGCAGAGAAT
GGAGACTTCTCTGAGGTCCAGCAGGTGCTGAAGGTTCTGGAAGATCCGTTCTCGGCCCAG
CCGAGTGTAGAGCAGCCTGCGAGTGTAGGGGCAGAGCAAGCTGTGTCAGACCCTCAAGGG
GGGGTGTCGTCCACGGCGGCAGCGGCCTCCAGGAAGGTCGTCTGCTACCACAACAGGCCA
CCGGCTTCGGCCACGGCAATCTCTGTCTCT
//
GeneScaffold_2640:subseq(358415,20542)	GeneWise	match	10542	6587	752.67	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	10542	10001	0.00	-	0	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	10000	9892	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	9891	9688	0.00	-	1	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	9687	8758	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	8757	8580	0.00	-	1	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	8579	7565	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	7564	7434	0.00	-	0	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	7433	7054	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	7053	6775	0.00	-	1	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	6774	6588	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	6587	6587	0.00	-	1	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-1
GeneScaffold_2640:subseq(358415,20542)	GeneWise	match	6582	2984	247.95	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	6582	6431	0.00	-	0	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	6430	5463	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	5462	5277	0.00	-	1	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	5276	4880	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	4879	4723	0.00	-	1	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	intron	4722	3179	0.00	-	.	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
GeneScaffold_2640:subseq(358415,20542)	GeneWise	cds	3178	2984	0.00	-	0	GeneScaffold_2640:subseq(358415,20542)-genewise-prediction-2
//
