TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298676538|ref|NP_001177311.1| selenoprotein L [Danio rerio]
         (302 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig74805 dna:contig contig::contig74805:1:436:1 REF                 60   5e-08

>contig74805 dna:contig contig::contig74805:1:436:1 REF
          Length = 436

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
 Frame = -2

Query: 166 HLTELKNSKM---------LLEAQSLRVLVVSYGSLEGATFWLEQTGFEFDMLLDTERTV 216
           HL  +K++K          LL A+S RVL+VSYGS+EGA  WLEQTG  F MLLD +RTV
Sbjct: 204 HLIHVKSNKYYCVCVCL*ALLGARSARVLLVSYGSVEGARLWLEQTGCTFPMLLDPQRTV 25


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.319    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,890,756
Number of Sequences: 398859
Number of extensions: 2387427
Number of successful extensions: 8074
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 6595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8074
length of query: 302
length of database: 277,371,529
effective HSP length: 121
effective length of query: 181
effective length of database: 229,109,590
effective search space: 41468835790
effective search space used: 41468835790
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)
