
genewise output
Score 117.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|169234966|re    5 GKSARKRKADSDEKEKLDDAKKEKLEDKDEET--GLRVVIEH        
                     G+   KRKAD+ ++EKL    KE+ E+ +E    G RV+IEH        
                     GRRGTKRKADAVQEEKLAAELKEEKEEVEESVSGGRRVIIEH        
GeneScaffold_36 5311 gccgaacaggggcggatgggcaggagggggagtggcagaagc        
                     ggggcagacactaaaatccataaaaaataagtcggggtttaa        
                     ttagcacgctgtgggagaggggaaggggggtcggttacctgc        


gi|169234966|re   45                           KSXRVYGRNAVVVREALADSHPE 
                                               KSXRVYGRNA  V+EAL    PE 
                                C:C[tgc]       KSXRVYGRNAEGVKEALLTVRPE 
GeneScaffold_36 5437 TGGTGAGCC  Intron 1   CAGCaatcgtgcaggggaggccagccg 
                       <2-----[5439 : 5735]-2> agggtaggacagtaacttctgca 
                                               gcaagcgtccggggaccggccta 


gi|169234966|re   69 LKVMINPHNPRRNSFEITLMDGER                          
                     L V +NP  PR  SFEITL++GER                          
                     LTVDLNPEKPRGKSFEITLVEGER          A:E[gag]        
GeneScaffold_36 5806 caggcacgaccgaatgaacggggaGGTAAACC  Intron 2        
                     tctatacaacggagtatcttagag <1-----[5879 : 6654]     
                     ccgcgcggatcgactgcggtgaga                          


gi|169234966|re   93      DVLWSGIKKGPPRKLKFPEPAEVVTALKQALE             
                           +LW+GIKKGPPRKLKFPEPA VV AL++ALE             
                          SILWTGIKKGPPRKLKFPEPAVVVAALEEALE             
GeneScaffold_36 6652 CAGAGaactagaaagcccacatcgcggggggcgggcg             
                     -1>  gttgcgtaagccgatatcacctttcctaacta             
                          cccgggcggcgccgggccggcggggcgagcaa             


//
Making a C in phase 2 intron
Making a E in phase 1 intron
>GeneScaffold_3633:subseq(0,21100).pep
GRRGTKRKADAVQEEKLAAELKEEKEEVEESVSGGRRVIIEHCKSXRVYGRNAEGVKEAL
LTVRPELTVDLNPEKPRGKSFEITLVEGERESILWTGIKKGPPRKLKFPEPAVVVAALEE
ALE
//
>GeneScaffold_3633:subseq(0,21100).[5311:6752].sp
GGTCGTCGAGGGACCAAACGCAAGGCCGATGCGGTTCAGGAGGAGAAATTGGCAGCGGAG
CTGAAGGAAGAAAAGGAGGAGGTGGAGGAGAGTGTCTCGGGGGGTCGTAGAGTCATCATT
GAGCACTGCAAGAGCTGACGAGTGTACGGGCGTAACGCCGAGGGGGTGAAGGAAGCCCTC
CTGACGGTCCGCCCTGAACTCACCGTGGACCTGAACCCGGAGAAACCTCGCGGGAAAAGC
TTTGAGATCACGCTGGTTGAGGGAGAGAGAGAGAGCATCCTCTGGACGGGGATCAAGAAG
GGCCCGCCCCGCAAGCTGAAGTTCCCCGAGCCGGCCGTGGTGGTGGCGGCCCTGGAAGAG
GCCCTAGAA
//
GeneScaffold_3633:subseq(0,21100)	GeneWise	match	5311	6752	118.29	+	.	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
GeneScaffold_3633:subseq(0,21100)	GeneWise	cds	5311	5438	0.00	+	0	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
GeneScaffold_3633:subseq(0,21100)	GeneWise	intron	5439	5735	0.00	+	.	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
GeneScaffold_3633:subseq(0,21100)	GeneWise	cds	5736	5878	0.00	+	1	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
GeneScaffold_3633:subseq(0,21100)	GeneWise	intron	5879	6654	0.00	+	.	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
GeneScaffold_3633:subseq(0,21100)	GeneWise	cds	6655	6752	0.00	+	2	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
//

genewise output
Score 17.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|169234966|re    4 RGKSARKRKADSDEKEKLDDAKKEKLEDKDEE                  
                     RGK    R+ +S EKEK  + ++E+  +++ E                  
                     RGKKRSNRERES-EKEKERERERERERERERE                  
GeneScaffold_36 -732 agaaaaaagaga gagagagagagagagagag                  
                     ggaaggagagag aaaaagagagagagagaga                  
                     aaagatcagagc gagagagagagagagagag                  


//
>GeneScaffold_3633:subseq(0,21100).pep
RGKKRSNRERESEKEKERERERERERERERE
//
>GeneScaffold_3633:subseq(0,21100).[732:638].sp
AGAGGAAAAAAGAGAAGTAACAGAGAGAGAGAGAGCGAGAAAGAGAAAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
//
GeneScaffold_3633:subseq(0,21100)	GeneWise	match	732	640	17.85	-	.	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
GeneScaffold_3633:subseq(0,21100)	GeneWise	cds	732	640	0.00	-	0	GeneScaffold_3633:subseq(0,21100)-genewise-prediction-1
//
