TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62287893|sp|Q803A7.1|SPCS_DANRE RecName:
Full=O-phosphoseryl-tRNA(Sec) selenium transferase; AltName:
Full=Selenocysteine synthase; Short=Sec synthase; AltName:
Full=Selenocysteinyl-tRNA(Sec) synthase; AltName:
Full=Sep-tRNA:Sec-tRNA synthase; Short=SepSecS; AltName: Full=Soluble
liver antigen/liver pancreas antigen-like; AltName: Full=UGA
suppressor tRNA-associated protein homolog
         (490 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_1111 dna:genescaffold genescaffold:gadMor1:GeneScaf...   105   2e-21
contig296637 dna:contig contig::contig296637:1:325:1 REF               60   1e-07
contig754055 dna:contig contig::contig754055:1:151:1 REF               53   9e-06

>GeneScaffold_1111 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1111:1:276515:1 REF
          Length = 276515

 Score =  105 bits (262), Expect = 2e-21
 Identities = 47/55 (85%), Positives = 53/55 (96%)
 Frame = -3

Query: 129   TGVRSVSSCFVVPMATGMSLTLCFLTLRHRRPKARYILWPRIDQKSCFKSMVTAG 183
             +GVR  +SCFVVPMATGMSL+LCFLTLRHRRP+ARYI+WPRIDQKSCFK+MVTAG
Sbjct: 99156 SGVRGAASCFVVPMATGMSLSLCFLTLRHRRPRARYIVWPRIDQKSCFKAMVTAG 98992



 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 42/62 (67%), Positives = 54/62 (87%)
 Frame = -2

Query: 403   ARVVPLGVQQTVSGHTFSGFMSHSEAYPCPYLNAASAIGITKGDVTVCMKRLGKCLKILK 462
             +RV+PLG +QT+ GHTF GFMSHSEAYP PYLNAA+A+G+T+ DV +C+KRL +CLK L+
Sbjct: 89812 SRVIPLGKEQTLGGHTFRGFMSHSEAYPVPYLNAAAAVGVTRDDVVLCVKRLDRCLKALR 89633

Query: 463   KE 464
             KE
Sbjct: 89632 KE 89627



 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = -2

Query: 183   GFEPVVIENVLEGDELRTNLEEVERKIEEFGAENTLCVHSTTSCFAPRVPDR 234
             G+EPVV+ENVLEGDELRT++  VER+I+  GAE+ LCVHSTTSCFAPRVPDR
Sbjct: 98587 GYEPVVVENVLEGDELRTDVAAVERQIQALGAESVLCVHSTTSCFAPRVPDR 98432



 Score = 87.0 bits (214), Expect = 6e-16
 Identities = 41/50 (82%), Positives = 47/50 (94%)
 Frame = -1

Query: 268   QGARVGRIDAFVQSLDKNFVVPVGGAIIAGFDENFIQEISKIYPGRASAS 317
             QGARVGR+DAFVQSLDKNF+VPVGGAIIAGFDE FIQEIS++YPG  +A+
Sbjct: 96854 QGARVGRVDAFVQSLDKNFMVPVGGAIIAGFDEAFIQEISQMYPGELTAA 96705



 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 36/38 (94%), Positives = 38/38 (100%)
 Frame = -2

Query: 90    RLIHGIGRSGDIAAVQPKAAGSSLLNKITNSVVLDVLK 127
             RLIHGIGRSGDIAAVQPKAAGSSLLNK+TNSVVLDVL+
Sbjct: 99919 RLIHGIGRSGDIAAVQPKAAGSSLLNKLTNSVVLDVLR 99806



 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/35 (85%), Positives = 33/35 (94%)
 Frame = -2

Query: 234   RLEELSVLCAKHDIPHIVNNAYGVQPSKCMHLIQQ 268
             R+EEL+ LCAK+DIPHIVNNAYGVQ SKCMHLIQQ
Sbjct: 97780 RIEELATLCAKYDIPHIVNNAYGVQSSKCMHLIQQ 97676



 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 1      MNSENFRLSEKLVSASYVRQGLDARRGHEQLIRRLLDQ 38
              MN ENF LSE++VS SYVRQG  ARRGHEQLIR+LL+Q
Sbjct: 101887 MNPENFSLSERIVSPSYVRQGSQARRGHEQLIRQLLEQ 101774



 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = -3

Query: 64     NNFLGNCGVGEREGRVASSLVARRHYR 90
              NNFLGNCGVGEREGRVAS LVARRHYR
Sbjct: 100728 NNFLGNCGVGEREGRVASGLVARRHYR 100648


>contig296637 dna:contig contig::contig296637:1:325:1 REF
          Length = 325

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = -2

Query: 64  NNFLGNCGVGEREGRVASSLVARRHYR 90
           NNFLGNCGVGEREGRVASSLVARRHYR
Sbjct: 324 NNFLGNCGVGEREGRVASSLVARRHYR 244


>contig754055 dna:contig contig::contig754055:1:151:1 REF
          Length = 151

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 22/25 (88%), Positives = 25/25 (100%)
 Frame = -3

Query: 38 QGKCPEEGWSESTIELFLNELAVMD 62
          QGKCPE+GWSEST+ELFLNELA+MD
Sbjct: 77 QGKCPEKGWSESTVELFLNELALMD 3


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.319    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,634,014
Number of Sequences: 398859
Number of extensions: 7240486
Number of successful extensions: 31614
Number of sequences better than 1.0e-04: 3
Number of HSP's better than  0.0 without gapping: 19332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31605
length of query: 490
length of database: 277,371,529
effective HSP length: 126
effective length of query: 364
effective length of database: 227,115,295
effective search space: 82669967380
effective search space used: 82669967380
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)
