
genewise output
Score 231.14 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|29165356|gb|    1 MAGEVYLLWLLPLLQG                       LASYGAELSS 
                     M+GEVYLLWLL LLQ                        L+++GA+L+S 
                     MSGEVYLLWLLSLLQT                       LSAFGADLTS 
GeneScaffold_44 9029 atgggtcctcctcccaGTAAGAA  Intron 1   CAGctgtgggcat 
                     tcgatattgttcttac<0-----[9077 : 9996]-0>tcctgcatcc 
                     gggagtcggctgcaag                       gggcctcggg 


gi|29165356|gb|   27 EACRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRK    
                     EACRE+GFSSNLLCSSC+LLG+FSL+Q+   CRQCCQ+EAQLE RK    
                     EACREMGFSSNLLCSSCDLLGEFSLSQIQPVCRQCCQQEAQLEARK    
GeneScaffold_4410027 ggtcgagttaacctattgccggtacacaccgtccttccggccggca    
                     acggatgtcgattggcgattgatgtgatactggaggaaacatacga    
                     gccgggcccccggcccccggcgccccgcgcccggccgggcgggacg    


gi|29165356|gb|   73                        LYPGAILEVCGXKLGRFPQVQ      
                                            LYPGAILEVCGXKLGRFPQVQ      
                                            LYPGAILEVCGXKLGRFPQVQ      
GeneScaffold_4410165 GTGAGAT  Intron 2   CAGctcggacggtgtatgatccgc      
                     <0-----[10165:14121]-0>tacgcttatgggatggtcata      
                                            ccagccgactaaagggccaca      


gi|29165356|gb|   94                           FVRSDKPKLFRGLQIK        
                                               FVRSDKPK+FRGLQIK        
                               A:A[gcc]        FVRSDKPKMFRGLQIK        
GeneScaffold_4414185 GGTGAGCA  Intron 3   CAGCCtgcagacaatcgccaa        
                      <1-----[14186:14746]-1>  ttggaacattggtata        
                                               ccgtcgaggtattgcg        


gi|29165356|gb|  111                        YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLD+ GN+ EELSILK 
                                            YVRGSDPVLKLLDEAGNMEEELSILK 
GeneScaffold_4414797 GTGAGAT  Intron 4   CAGtgagtgcgcaccggggaagggcaaca 
                     <0-----[14797:15229]-0>atggcacttattaacgataaatgtta 
                                            ccacgccgggggcgggcggggccccg 


gi|29165356|gb|  137 WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
GeneScaffold_4415308 taagagggtcagacgca                                 
                     gacagtaattgaatagt                                 
                     gcgccgggcccggggcc                                 


//
Making a A in phase 1 intron
>GeneScaffold_4461:subseq(545924,26000).pep
MSGEVYLLWLLSLLQTLSAFGADLTSEACREMGFSSNLLCSSCDLLGEFSLSQIQPVCRQ
CCQQEAQLEARKLYPGAILEVCGXKLGRFPQVQAFVRSDKPKMFRGLQIKYVRGSDPVLK
LLDEAGNMEEELSILKWNTDSVEEFLSEKLERI
//
>GeneScaffold_4461:subseq(545924,26000).[9029:15358].sp
ATGTCGGGGGAAGTGTATCTCCTGTGGCTCCTTTCGCTCCTACAAACGCTGTCGGCGTTC
GGCGCTGACCTGACGTCGGAGGCCTGCCGGGAGATGGGCTTCTCCAGCAACCTGCTGTGC
AGCTCCTGCGACCTGCTGGGCGAGTTCAGCCTCAGCCAGATCCAGCCCGTCTGCCGGCAG
TGCTGCCAGCAGGAGGCCCAGCTGGAGGCACGCAAGCTCTACCCAGGGGCCATCCTGGAA
GTCTGTGGATGAAAATTGGGGAGGTTCCCCCAAGTCCAAGCCTTCGTCCGGAGTGACAAG
CCAAAGATGTTTCGAGGTCTTCAGATCAAGTACGTCAGAGGCTCGGACCCCGTGCTGAAG
CTGCTGGACGAGGCGGGGAACATGGAGGAGGAGCTCAGCATCCTCAAGTGGAACACGGAC
AGCGTGGAGGAGTTCCTCAGCGAGAAGCTGGAGCGCATC
//
GeneScaffold_4461:subseq(545924,26000)	GeneWise	match	9029	15358	231.14	+	.	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	cds	9029	9076	0.00	+	0	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	intron	9077	9996	0.00	+	.	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	cds	9997	10164	0.00	+	0	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	intron	10165	14121	0.00	+	.	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	cds	14122	14185	0.00	+	0	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	intron	14186	14746	0.00	+	.	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	cds	14747	14796	0.00	+	2	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	intron	14797	15229	0.00	+	.	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	cds	15230	15358	0.00	+	0	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
//

genewise output
Score 15.55 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|29165356|gb|   72 KLYPGAILEVCGXKLGR                                 
                     K+    +L+ CG + GR                                 
                     KIVAAVVLKECGHRRGR                                 
GeneScaffold_4-12893 aagggggtagtgcccgc                                 
                     attcctttaaggagggg                                 
                     gacccccgagctcgcta                                 


//
>GeneScaffold_4461:subseq(545924,26000).pep
KIVAAVVLKECGHRRGR
//
>GeneScaffold_4461:subseq(545924,26000).[12893:12841].sp
AAGATAGTCGCCGCCGTCGTCTTGAAAGAGTGCGGTCACCGGCGCGGTCGA
//
GeneScaffold_4461:subseq(545924,26000)	GeneWise	match	12893	12843	15.55	-	.	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
GeneScaffold_4461:subseq(545924,26000)	GeneWise	cds	12893	12843	0.00	-	0	GeneScaffold_4461:subseq(545924,26000)-genewise-prediction-1
//
