TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157276601|ref|NP_001004295.2| selenophosphate synthetase 2
[Danio rerio]
         (447 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_875 dna:genescaffold genescaffold:gadMor1:GeneScaff...   117   1e-34
GeneScaffold_2427 dna:genescaffold genescaffold:gadMor1:GeneScaf...   115   1e-24

>GeneScaffold_875 dna:genescaffold genescaffold:gadMor1:GeneScaffold_875:1:271393:1 REF
          Length = 271393

 Score =  117 bits (293), Expect = 4e-25
 Identities = 55/72 (76%), Positives = 65/72 (90%)
 Frame = -1

Query: 287    AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346
              AA LMHKF AHA TD+TGFG++GHA NLA QQ+++V+FVIHNLPII+KMAAISKA GNLF
Sbjct: 112423 AAGLMHKFQAHAGTDVTGFGLLGHANNLAAQQRSEVSFVIHNLPIIAKMAAISKACGNLF 112244

Query: 347    GLLQGTSSETSG 358
               L+QGTS+ETSG
Sbjct: 112243 NLIQGTSAETSG 112208



 Score = 95.5 bits (236), Expect(2) = 1e-34
 Identities = 41/53 (77%), Positives = 51/53 (96%)
 Frame = -2

Query: 171    KERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNDFIL 223
              +ER+  +PL+M+GFRDAAEEGGTSVTGGQTV+NPWII+GGVASVVCQP++FI+
Sbjct: 113358 QERERAMPLLMRGFRDAAEEGGTSVTGGQTVVNPWIIVGGVASVVCQPSEFIM 113200



 Score = 87.8 bits (216), Expect = 3e-16
 Identities = 47/84 (55%), Positives = 55/84 (65%)
 Frame = -1

Query: 358    GGLLICLPREQAARFCAEMKSSRMXXXXXXXXXXXXXXXXXWIIGIVEKGNRCARIIDKP 417
              GGLL+CLPREQAA+FC+EMKS                    WIIGIVEKG+R ARIIDKP
Sbjct: 111829 GGLLVCLPREQAAKFCSEMKSQ------GSGFGGQGAAGGAWIIGIVEKGDRRARIIDKP 111668

Query: 418    RIIEVPYRGSVVSVQEGSNNNASP 441
              RIIEVP RGS  + Q+ S  + +P
Sbjct: 111667 RIIEVPPRGSPAANQDNSTTSPAP 111596



 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 45/86 (52%), Positives = 53/86 (61%)
 Frame = -2

Query: 24     GYQALNPEEHGLDRGFRLTAFSDMKGXGCKVPQETLLKLLQGLEPDRPPXXXXXXXXXXX 83
              GY+   PE+HGLDRGFRLTAFSD+KG GCKVPQE LL+LL GLEPD              
Sbjct: 116346 GYKPFKPEDHGLDRGFRLTAFSDLKG*GCKVPQEALLRLLAGLEPD-----PAAGAGEAG 116182

Query: 84     XXXADFGLVSAAQGPRLGIGMDSCVI 109
                 ++FG      GPRLG+   + VI
Sbjct: 116181 DQASEFG--QQPPGPRLGMSRRAAVI 116110



 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = -1

Query: 100    LGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 135
              LGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM
Sbjct: 115723 LGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 115616



 Score = 74.7 bits (182), Expect(2) = 1e-34
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = -3

Query: 136    GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK 171
              GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK
Sbjct: 113558 GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK 113451



 Score = 64.3 bits (155), Expect(2) = 1e-21
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -1

Query: 224    PDGAVPGDVLVLTKPLGTQVAVNAHQWLD 252
              PDGAVPGDVLVLTKPLGTQVAVNAHQWLD
Sbjct: 112924 PDGAVPGDVLVLTKPLGTQVAVNAHQWLD 112838



 Score = 62.0 bits (149), Expect(2) = 1e-21
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = -3

Query: 254    PEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAALMHKFNA 296
              PE+WNKIKLV+S+EEV++AYQEAM +MATLNRT  + +  ++A
Sbjct: 112733 PERWNKIKLVVSKEEVKEAYQEAMFSMATLNRTGKSSLLSYSA 112605


>GeneScaffold_2427 dna:genescaffold genescaffold:gadMor1:GeneScaffold_2427:1:223325:1 REF
          Length = 223325

 Score =  115 bits (288), Expect = 1e-24
 Identities = 53/78 (67%), Positives = 70/78 (89%)
 Frame = +1

Query: 287   AAALMHKFNAHAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNLF 346
             AA+LMH FNAHAATDITGFGI+GHA+ LA+QQ+++V+FVIHNLP+++KMAA+SKA GN+F
Sbjct: 95089 AASLMHTFNAHAATDITGFGILGHAQTLARQQRSEVSFVIHNLPVLAKMAAVSKACGNMF 95268

Query: 347   GLLQGTSSETSGGLLICL 364
             GL+ GT  ETS G+ +C+
Sbjct: 95269 GLMHGTCPETS-GVCVCV 95319



 Score =  115 bits (287), Expect = 2e-24
 Identities = 61/112 (54%), Positives = 68/112 (60%), Gaps = 39/112 (34%)
 Frame = +1

Query: 101   GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM------------------------- 135
             GIGMD+CVIPLRHGGLSLVQTTD+ YP+V+DPYMM                         
Sbjct: 92740 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMVRKRDTISIPFHTMGHNVHNVHIAA 92919

Query: 136   --------------GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEKER 173
                           GR+ACAN LSDLYAMG+TECDNMLMLL VS KM+EK R
Sbjct: 92920 AEFIEIVSVCFCCQGRLACANALSDLYAMGVTECDNMLMLLGVSNKMSEKVR 93075



 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 37/53 (69%), Positives = 50/53 (94%)
 Frame = +3

Query: 171   KERDLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNDFIL 223
             +ERD V+PL+++GF+DA+EE GTSVTGGQTV+NPW++IGGVA+ VCQPN+FI+
Sbjct: 93360 QERDKVMPLIIQGFKDASEEAGTSVTGGQTVLNPWVVIGGVATTVCQPNEFIM 93518



 Score = 66.2 bits (160), Expect(2) = 3e-10
 Identities = 41/80 (51%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = +1

Query: 365   PREQAARFCAEMKSSRMXXXXXXXXXXXXXXXXXWIIGIVEKGNRCARIIDKPRIIEVPY 424
             PREQAARFCAE+KS +                  WIIGIVEKGNR ARIIDKPRIIEV  
Sbjct: 97333 PREQAARFCAEIKSPKYGEGHQA-----------WIIGIVEKGNRTARIIDKPRIIEVAP 97479

Query: 425   RGSVVSVQEG--SNNNASPP 442
             + +  +V        N SPP
Sbjct: 97480 QAATQNVNPTPVPPPNPSPP 97539



 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/37 (70%), Positives = 31/37 (83%)
 Frame = +2

Query: 254   PEKWNKIKLVISREEVEQAYQEAMLNMATLNRTAAAL 290
             PEKWNKIKLV+++E+VE AY EAM+NMA LNRT   L
Sbjct: 94193 PEKWNKIKLVVTQEDVELAYHEAMMNMARLNRTGRML 94303



 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%)
 Frame = +2

Query: 224   PDGAVPGDVLVLTKPLGTQVAVNAHQWLDI 253
             PD AVPGDVLVLTKPLGTQV V  HQWLDI
Sbjct: 93722 PDNAVPGDVLVLTKPLGTQVGVAVHQWLDI 93811



 Score = 21.6 bits (44), Expect(2) = 3e-10
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 358   GGLLICLP 365
             GGLLICLP
Sbjct: 97311 GGLLICLP 97334


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,898,565
Number of Sequences: 398859
Number of extensions: 5341025
Number of successful extensions: 16381
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 11666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16378
length of query: 447
length of database: 277,371,529
effective HSP length: 125
effective length of query: 322
effective length of database: 227,514,154
effective search space: 73259557588
effective search space used: 73259557588
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)
