TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45709581|gb|AAH67722.1| Methionine sulfoxide reductase B2
[Danio rerio]
         (180 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_648 dna:genescaffold genescaffold:gadMor1:GeneScaff...    92   3e-18
GeneScaffold_3966 dna:genescaffold genescaffold:gadMor1:GeneScaf...    54   1e-06

>GeneScaffold_648 dna:genescaffold genescaffold:gadMor1:GeneScaffold_648:1:547675:1 REF
          Length = 547675

 Score = 92.0 bits (227), Expect = 3e-18
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = -2

Query: 95     LFSSEAKYDAGAGWPSFCEAHGTWEKDESHANIVRRPDNSLGSTGTEVICK 145
              L SSEAKYD+G GWPSF EAHGTW +DESHA + RRPDNSLGS GTEV+CK
Sbjct: 483126 LVSSEAKYDSGTGWPSFTEAHGTWGRDESHACVTRRPDNSLGSAGTEVLCK 482974



 Score = 68.9 bits (167), Expect = 3e-11
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = -2

Query: 147    CDAHLGHVFEDGPDPTGQRFCINSVALNFKPRE 179
              CDAHLGHVF+DGPDP+GQRFCINSVAL FK RE
Sbjct: 482382 CDAHLGHVFDDGPDPSGQRFCINSVALQFKARE 482284



 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 29/33 (87%), Positives = 33/33 (100%)
 Frame = -2

Query: 39     GLQSLTRYDQSTDWQRKLSPEQYVVTREKGTEV 71
              GL+SLTRYD++TDWQ+KLSPEQYVVTREKGTEV
Sbjct: 486660 GLRSLTRYDETTDWQKKLSPEQYVVTREKGTEV 486562



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 72     PFSGIYLNHNEVGMYHCVCCDSPLF 96
              PFSGIYLNHNEVGMYHCVCC SP+F
Sbjct: 486280 PFSGIYLNHNEVGMYHCVCCSSPVF 486206


>GeneScaffold_3966 dna:genescaffold genescaffold:gadMor1:GeneScaffold_3966:1:97036:1 REF
          Length = 97036

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = -1

Query: 147   CDAHLGHVFEDGPDPTGQRFCINSVALNFKPRE 179
             C AHLGH+F+DGP PTG+R+CINS +L F+  E
Sbjct: 81589 CGAHLGHLFDDGPRPTGKRYCINSASLGFQGSE 81491


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.318    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,103,473
Number of Sequences: 398859
Number of extensions: 3677510
Number of successful extensions: 16347
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 11806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16346
length of query: 180
length of database: 277,371,529
effective HSP length: 114
effective length of query: 66
effective length of database: 231,901,603
effective search space: 15305505798
effective search space used: 15305505798
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)
