
genewise output
Score 15.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|45709581|gb|  158 GPDPTGQRFCINSV                                    
                     GP   GQR C+  V                                    
                     GPGIGGQRGCVRGV                                    
GeneScaffold_6417869 gcgaggcagtgagg                                    
                     gcgtggagggtggt                                    
                     gcgttagggtggac                                    


//
>GeneScaffold_648:subseq(473126,20152).pep
GPGIGGQRGCVRGV
//
>GeneScaffold_648:subseq(473126,20152).[17869:17910].sp
GGGCCCGGGATTGGTGGACAGAGGGGGTGTGTGAGGGGAGTC
//
GeneScaffold_648:subseq(473126,20152)	GeneWise	match	17869	17910	15.66	+	.	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	cds	17869	17910	0.00	+	0	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
//

genewise output
Score 268.97 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|45709581|gb|    1 MSRFLVRLSTVVSKGATGKSVLPQKRIFAGIRLISSST            
                     MSR+L R+S++VS+ A+ KS +   R    IR +S+S             
                     MSRLLARISSLVSQRASAKSSISLTRTPVLIRPLSTSQ            
GeneScaffold_6-13903 atcctgcattcgtccgagattattaaacgcaccctaac            
                     tcgttcgtccttcagcgcacctctcgcctttgctccga            
                     gctcatgctctttaggccgcgcaacatgcctacccata            


gi|45709581|gb|   39                           LQSLTRYDQSTDWQRKLSPEQYV 
                                               L+SLTRYD++TDWQ+KLSPEQYV 
                               G:G[gga]        LRSLTRYDETTDWQKKLSPEQYV 
GeneScaffold_6-13789 GGTACTGG  Intron 1   TAGGAcatcactggaagtcaacacgctg 
                      <1-----[13788:13534]-1>  tgctcgaaaccagaaatgcaaat 
                                               ggggtcctgcccgagagtaaact 


gi|45709581|gb|   63 VTREKGTEV                       PFSGIYLNHNEVGMYHC 
                     VTREKGTEV                       PFSGIYLNHNEVGMYHC 
                     VTREKGTEV                       PFSGIYLNHNEVGMYHC 
GeneScaffold_6-13462 gaagagaggGTAAGAG  Intron 2   TAGctagatcacagggatct 
                     tcgaagcat<0-----[13435:13155]-0>ctggtataaaatgtaag 
                     ccagggaag                       tctgccgcttggggccc 


gi|45709581|gb|   89 VCCDSPLF                          SEAKYDAGAGWPSFC 
                     VCC SP+F                          SEAKYD+G GWPSF  
                     VCCSSPVF           S:S[agt]       SEAKYDSGTGWPSFT 
GeneScaffold_6-13103 gttttcgtAGGTATCCC  Intron 3   TAGTtggatgtgagtctta 
                     tggccctt  <2-----[13077: 9993]-2> cacaaacgcggcctc 
                     cctatgcc                          agcgtcggccgagca 


gi|45709581|gb|  113 EAHGTWEKDESHANIVRRPDNSLGSTGTEVICKH                
                     EAHGTW +DESHA + RRPDNSLGS GTEV+CK                 
                     EAHGTWGRDESHACVTRRPDNSLGSAGTEVLCKI                
GeneScaffold_64-9946 ggcgatgcggacgtgacccgaacgaggaggctaa                
                     acagcgggaagacgtcggcaagtggcgcattgat                
                     gatgggggcgccctagtctcccgcccgcgggcac                


gi|45709581|gb|  147                        CDAHLGHVFEDGPDPTGQRFCINSVA 
                                            CDAHLGHVF+DGPDP+GQRFCINSVA 
                                            CDAHLGHVFDDGPDPSGQRFCINSVA 
GeneScaffold_64-9844 GTGAGTT  Intron 4   CAGtggctgcgtgggcgcagccttaaagg 
                     <0-----[9844 : 9257]-0>gacatgattaagcacggagtgtagtc 
                                            ctccgctgttcagcctcgcctcctgc 


gi|45709581|gb|  173 LNFKPRE                                           
                     L FK RE                                           
                     LQFKARE                                           
GeneScaffold_64-9178 cctagcg                                           
                     tatacga                                           
                     tgcacga                                           


//
Making a G in phase 1 intron
Making a S in phase 2 intron
>GeneScaffold_648:subseq(473126,20152).pep
MSRLLARISSLVSQRASAKSSISLTRTPVLIRPLSTSQGLRSLTRYDETTDWQKKLSPEQ
YVVTREKGTEVPFSGIYLNHNEVGMYHCVCCSSPVFSSEAKYDSGTGWPSFTEAHGTWGR
DESHACVTRRPDNSLGSAGTEVLCKICDAHLGHVFDDGPDPSGQRFCINSVALQFKARE
//
>GeneScaffold_648:subseq(473126,20152).[13903:9156].sp
ATGTCCCGTCTCTTAGCTCGGATCTCTTCCCTTGTTTCTCAACGGGCGAGCGCCAAGTCC
TCGATCTCATTAACCAGAACTCCGGTCCTCATTCGACCCCTCTCCACAAGTCAAGGACTG
AGGTCGCTGACTCGCTACGATGAGACCACCGACTGGCAAAAGAAACTGAGTCCAGAACAA
TACGTTGTCACCAGAGAGAAGGGGACAGAAGTGCCTTTCAGTGGGATCTACCTGAACCAT
AATGAGGTGGGGATGTACCACTGCGTCTGCTGTTCATCTCCGGTCTTCAGTTCAGAGGCC
AAGTATGACTCGGGGACCGGCTGGCCATCGTTCACAGAGGCACATGGGACGTGGGGGCGG
GACGAGAGCCACGCCTGTGTAACGCGTCGCCCTGACAACAGCCTGGGCAGCGCCGGGACC
GAGGTGCTGTGCAAAATCTGCGATGCCCACTTGGGCCATGTGTTTGATGACGGACCGGAC
CCCAGTGGCCAGCGCTTCTGTATCAACAGTGTGGCCCTTCAGTTCAAAGCCCGGGAA
//
GeneScaffold_648:subseq(473126,20152)	GeneWise	match	13903	9158	268.97	-	.	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	cds	13903	13789	0.00	-	0	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	intron	13788	13534	0.00	-	.	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	cds	13533	13436	0.00	-	2	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	intron	13435	13155	0.00	-	.	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	cds	13154	13078	0.00	-	0	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	intron	13077	9993	0.00	-	.	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	cds	9992	9845	0.00	-	1	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	intron	9844	9257	0.00	-	.	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
GeneScaffold_648:subseq(473126,20152)	GeneWise	cds	9256	9158	0.00	-	0	GeneScaffold_648:subseq(473126,20152)-genewise-prediction-1
//
