
genewise output
Score 14.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|287327510|re   29 PLFSSRSKYEHS                                      
                     PL SSR+  +H+                                      
                     PLVSSRNALQHA                                      
GeneScaffold_17  261 ccgataagcccg                                      
                     cttgcgactaac                                      
                     ctgccgccaata                                      


//
>GeneScaffold_1763.pep
PLVSSRNALQHA
//
>GeneScaffold_1763.[261:296].sp
CCCCTTGTGAGCTCCAGGAACGCCCTACAACATGCA
//
GeneScaffold_1763	GeneWise	match	261	296	14.57	+	.	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	cds	261	296	0.00	+	0	GeneScaffold_1763-genewise-prediction-1
//

genewise output
Score 151.04 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|287327510|re    1 MSFCSFFGKEFYKDHFKP                          IYACS 
                     MSFC F G E+YK+HF+P                          +Y CS 
                     MSFCQFNGGEIYKEHFQP          G:G[ggt]        VYVCS 
GeneScaffold_17-2203 atttctagggatagctccGGTGAGAT  Intron 1   CAGGTgtgtt 
                     tctgataggataaaatac <1-----[2148 : 1957]-1>  tatgc 
                     gtctgtctcgtcggtcga                          gcccc 


gi|287327510|re   25 QCGHPLFSSRSKYEHSSPWPAFTETIREDSVTKMMETLTAYKV       
                      C HPLF+SRSK+ HSSPWPAFTETIREDSVT+MME+LTA+K        
                     TCSHPLFTSRSKFAHSSPWPAFTETIREDSVTRMMESLTAFKA       
GeneScaffold_17-1939 ataccctaactatgcttctcgtagaaaggagaaaagtcagtag       
                     cggacttcggcatcacccgcctcactgaagtcgttactcctac       
                     cccctgtctctacctccagtcccgccggccgcggggcctttgg       


gi|287327510|re   68                           -LCGKCGNGLGHEFLNDGPEEGL 
                                                LCGKCGNGLGHEF+NDGP +GL 
                               -:S[agt]        !LCGKCGNGLGHEFVNDGPGQGL 
GeneScaffold_17-1810 AGTTTCAG  Intron 2   TAGGT1ctgatgagcgcgtgaggcgcgc 
                      <1-----[1809 : 1364]-1>   tggaggagtgaattaagcgagt 
                                                gtcgtccagttgtgccagggta 


gi|287327510|re   90 SRFXIFSHSLKFVPKDKVDK                              
                     SRFXIFSHSLKFVP   + K                              
                     SRFXIFSHSLKFVPNKGIRK                              
GeneScaffold_17-1294 tcttatactcatgcaagaaa                              
                     cgtgttgactattcaagtga                              
                     gccaacccgggccctataag                              


//
Making a G in phase 1 intron
Making a S in phase 1 intron
>GeneScaffold_1763.pep
MSFCQFNGGEIYKEHFQPGVYVCSTCSHPLFTSRSKFAHSSPWPAFTETIREDSVTRMME
SLTAFKASXLCGKCGNGLGHEFVNDGPGQGLSRFXIFSHSLKFVPNKGIRK
//
>GeneScaffold_1763.[2203:1360].sp
ATGTCTTTCTGTCAGTTTAACGGTGGCGAGATTTACAAGGAGCATTTCCAGCCAGGTGTG
TACGTCTGCTCCACCTGCAGCCACCCTCTGTTTACCAGTCGCTCTAAATTCGCCCATTCC
TCCCCATGGCCTGCCTTCACCGAGACCATCAGGGAGGACAGCGTGACCAGGATGATGGAG
TCCCTCACTGCTTTTAAGGCGAGT
>GeneScaffold_1763.[1360:1233].sp
CTGTGTGGCAAGTGTGGCAACGGACTGGGTCATGAGTTTGTGAACGACGGACCGGGGCAG
GGTCTATCGCGCTTCTGAATATTCAGCCACTCGCTGAAGTTCGTCCCCAATAAAGGTATA
AGAAAG
//
GeneScaffold_1763	GeneWise	match	2203	1362	87.67	-	.	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	cds	2203	2149	0.00	-	0	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	intron	2148	1957	0.00	-	.	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	cds	1956	1810	0.00	-	2	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	intron	1809	1364	0.00	-	.	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	cds	1363	1362	0.00	-	2	GeneScaffold_1763-genewise-prediction-1
GeneScaffold_1763	GeneWise	match	1360	1235	63.37	-	.	GeneScaffold_1763-genewise-prediction-2
GeneScaffold_1763	GeneWise	cds	1360	1235	0.00	-	0	GeneScaffold_1763-genewise-prediction-2
//
