TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|46048169|ref|NP_840073.2| methionine-R-sulfoxide reductase
B1-A [Danio rerio]
         (110 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_1755 dna:genescaffold genescaffold:gadMor1:GeneScaf...    85   2e-16
GeneScaffold_1763 dna:genescaffold genescaffold:gadMor1:GeneScaf...    70   5e-12

>GeneScaffold_1755 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1755:1:707521:1 REF
          Length = 707521

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 45/52 (86%)
 Frame = -1

Query: 18     SGMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYKVRC 69
              +G+Y C++C ++LFSSRSK+EHSSPWPAFTET+ EDSVSK  ER GA+KV C
Sbjct: 523258 TGIYACSKCDHKLFSSRSKFEHSSPWPAFTETVQEDSVSKHVERPGAFKVSC 523103



 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -2

Query: 65     YKVRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIPKVKNE 108
              ++V CGKCGNGLGHEFVNDGP  G SRF IFSSSLKFIPK K +
Sbjct: 522084 FQVLCGKCGNGLGHEFVNDGPSKGKSRF*IFSSSLKFIPKGKKQ 521953


>GeneScaffold_1763 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1763:1:2564:1 REF
          Length = 2564

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 30/49 (61%), Positives = 39/49 (79%)
 Frame = -2

Query: 18   SGMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYK 66
            +G+YVC+ C + LF+SRSK+ HSSPWPAFTETI EDSV++  E   A+K
Sbjct: 1960 TGVYVCSTCSHPLFTSRSKFAHSSPWPAFTETIREDSVTRMMESLTAFK 1814



 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = -2

Query: 67   VRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIP 103
            V CGKCGNGLGHEFVNDGP  GLSRF IFS SLKF+P
Sbjct: 1363 VLCGKCGNGLGHEFVNDGPGQGLSRF*IFSHSLKFVP 1253


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.319    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,065,470
Number of Sequences: 398859
Number of extensions: 2207765
Number of successful extensions: 8948
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 7206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8947
length of query: 110
length of database: 277,371,529
effective HSP length: 82
effective length of query: 28
effective length of database: 244,665,091
effective search space: 6850622548
effective search space used: 6850622548
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)
