
genewise output
Score 15.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|284507300|re   83 PELNALHEELKSD                                     
                     P LN  +++ KSD                                     
                     PSLNQFYDQKKSD                                     
contig25406:sub 2704 cacacttgcaaag                                     
                     cgtaataaaaaga                                     
                     ttacatttgaatt                                     


//
>contig25406:subseq(1,4054).pep
PSLNQFYDQKKSD
//
>contig25406:subseq(1,4054).[2704:2742].sp
CCTAGTCTAAACCAATTTTATGATCAGAAAAAAAGTGAT
//
contig25406:subseq(1,4054)	GeneWise	match	2704	2742	15.45	+	.	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	cds	2704	2742	0.00	+	0	contig25406:subseq(1,4054)-genewise-prediction-1
//

genewise output
Score 183.12 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|284507300|re   36 DNSAEGSIYDYGATTIDGSRFIPFKEYQGKYLLFVNVATFXGLTMQYP  
                     +    G+IY Y A T++ SR + F EY G+ +LFVN AT+X LT QY   
                     ETDVNGTIYRYQAKTLNESRTVSFSEYVGQTVLFVNTATYXSLTNQYV  
contig25406:sub-1689 gaggagaatatcgaacagacagttagtggcagctgaagatttcaactg  
                     acatagctagaacactaaggctctgaatgacttttacccagctcaaat  
                     aatactcttgcgaacgtgtacccccgctggacctccatacactccgtg  


gi|284507300|re   84                           LNALHEELKSDNFVILGFPCNQF 
                                               LNALHEELKS  F +LGFPCN F 
                               E:E[gag]        LNALHEELKSYGFTVLGFPCNIF 
contig25406:sub-1545 GGTGAGCA  Intron 1   CAGAGtagccggcattgtagcgtctaat 
                      <1-----[1544 : 1437]-1>  tactaaatacagtcttgtcgatt 
                                               gtaacggggctacctcgtctttt 


gi|284507300|re  108 GLQEPGRNEEIPLGL                          YVRPGTNF 
                     G QEPG N+EI  G+                          +VRPG  F 
                     GKQEPGNNDEILPGI           K:K[aaa]       HVRPGKGF 
contig25406:sub-1365 gacgcgaaggaccgaAAGTAAGTA  Intron 2   CAGAcgacgagt 
                     gaaacgaaaattcgt  <2-----[1318 :  916]-2> atgcgagt 
                     aaaaagcttgcaata                          caaaagat 


gi|284507300|re  132 VPNFQLFEKKDVNGWKEQKFYTFLKN                        
                     VP F LFE  DVNG +EQ  YTFLK                         
                     VPTFPLFELGDVNGDQEQPVYTFLKA          -:K[aag]      
contig25406:sub -890 gcatcctgcgggaggcgccgtatcagAGTCCCCT  Intron 3      
                     tcctcttatgatagaaaactacttac <1-----[811  :  686]   
                     ccgcggtgcttctatgaaggccccgg                        


gi|284507300|re  158      -SCPPVGDTFGNPPFRLNWEPLKVNDIKWNFEKFLVGPDGHAVK 
                           SCPPVGD +G    RL WEPLK++DIKWNFEKFLVGPDG  V+ 
                          !SCPPVGDDLGPASERLFWEPLKLSDIKWNFEKFLVGPDGKPVR 
contig25406:sub -688 CAGAG1ttccggggcgcgtgacttgccacagaatatgatcggcggacga 
                     -1>   cgcctgaatgcccagttgactatgatagataatttgcagactg 
                           ccggccccgaggcgggcgggcggcccggccggcggggtggacg 


gi|284507300|re  201 RWHPRTSVAQVRRDVVSYIK                              
                     RW  R  V+ VRR +  Y++                              
                     RWLSRVEVSVVRRFITDYLR                              
contig25406:sub -553 atttagggtggaataagtcc                              
                     ggtcgtatcttggttcaatg                              
                     ggatgcaccccaaccacccg                              


//
Making a E in phase 1 intron
Making a K in phase 2 intron
Making a K in phase 1 intron
>contig25406:subseq(1,4054).pep
ETDVNGTIYRYQAKTLNESRTVSFSEYVGQTVLFVNTATYXSLTNQYVELNALHEELKSY
GFTVLGFPCNIFGKQEPGNNDEILPGIKHVRPGKGFVPTFPLFELGDVNGDQEQPVYTFL
KAKXSCPPVGDDLGPASERLFWEPLKLSDIKWNFEKFLVGPDGKPVRRWLSRVEVSVVRR
FITDYLR
//
>contig25406:subseq(1,4054).[1689:682].sp
GAAACAGATGTAAACGGTACCATTTATAGGTACCAGGCAAAAACCCTGAATGAGAGTCGA
ACCGTCTCCTTCAGCGAGTACGTTGGGCAGACAGTCCTCTTTGTCAACACAGCTACATAC
TGATCCCTTACCAACCAGTATGTGGAGTTGAATGCACTACACGAGGAGCTGAAGTCCTAT
GGATTCACCGTTCTCGGGTTTCCCTGTAATATTTTTGGAAAACAAGAACCAGGGAACAAT
GATGAGATCCTACCAGGTATAAAACACGTAAGACCAGGAAAGGGATTTGTCCCCACGTTC
CCGCTGTTTGAGCTCGGTGATGTCAATGGAGATCAGGAACAACCGGTGTACACCTTCCTC
AAGGCGAAG
>contig25406:subseq(1,4054).[682:492].sp
TCCTGCCCGCCGGTCGGCGACGACCTGGGACCGGCGTCCGAGAGGCTGTTCTGGGAGCCG
CTCAAGCTGAGCGACATCAAGTGGAACTTCGAGAAGTTCCTGGTGGGGCCGGATGGGAAG
CCAGTCAGGAGGTGGTTATCTAGGGTCGAAGTCTCCGTCGTCAGAAGATTCATCACAGAC
TACCTCCGG
//
contig25406:subseq(1,4054)	GeneWise	match	1689	684	84.65	-	.	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	cds	1689	1545	0.00	-	0	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	intron	1544	1437	0.00	-	.	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	cds	1436	1319	0.00	-	2	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	intron	1318	916	0.00	-	.	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	cds	915	812	0.00	-	1	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	intron	811	686	0.00	-	.	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	cds	685	684	0.00	-	2	contig25406:subseq(1,4054)-genewise-prediction-1
contig25406:subseq(1,4054)	GeneWise	match	682	494	98.47	-	.	contig25406:subseq(1,4054)-genewise-prediction-2
contig25406:subseq(1,4054)	GeneWise	cds	682	494	0.00	-	0	contig25406:subseq(1,4054)-genewise-prediction-2
//
