TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|212276144|ref|NP_001131027.1| glutathione peroxidase 3
(plasma) precursor [Danio rerio]
         (222 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_1266 dna:genescaffold genescaffold:gadMor1:GeneScaf...   107   1e-22
GeneScaffold_168 dna:genescaffold genescaffold:gadMor1:GeneScaff...   100   1e-20
contig25406 dna:contig contig::contig25406:1:4055:1 REF                97   2e-19
GeneScaffold_1971 dna:genescaffold genescaffold:gadMor1:GeneScaf...    83   2e-15
GeneScaffold_2821 dna:genescaffold genescaffold:gadMor1:GeneScaf...    57   2e-07

>GeneScaffold_1266 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1266:1:488504:1 REF
          Length = 488504

 Score =  107 bits (267), Expect = 1e-22
 Identities = 71/220 (32%), Positives = 102/220 (46%), Gaps = 46/220 (20%)
 Frame = -1

Query: 37     SFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQ-YVELNALHEELRHLGFTIL 95
              +F++  A T+ G   + F+ + G+ VL+ NVA+  G T + Y EL+ L  +  H    +L
Sbjct: 477194 TFYDLKATTLEGAT-VDFNVFRGRVVLIENVASL*GTTTRDYSELSQLQSKYPHR-LVVL 477021

Query: 96     GFPCDQFGKQ------------------------------------------EPGENNEI 113
              GFPC+QFG Q                                          E   N EI
Sbjct: 477020 GFPCNQFGYQVSSTAQ*DSTSDMPIEAFDL*PHLPLNALSKITVCVCVCHLQENLSNGEI 476841

Query: 114    LSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACPPVGE---SFGATSNRLFW 170
              L++LKYVRPG G+ P F +FEK +VNG     +F +LK+  P   +   S       L W
Sbjct: 476840 LNSLKYVRPGAGYEPGFTVFEKCEVNGANPHPVFAYLKDKLPYPEDDPNSLMQDPKHLIW 476661

Query: 171    EPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRADI 210
               P+  ND+ WNFEKFL+ P+G P  R+  +     +  DI
Sbjct: 476660 TPICRNDVSWNFEKFLVGPEGEPFKRYSKKFPTISIEPDI 476541


>GeneScaffold_168 dna:genescaffold genescaffold:gadMor1:GeneScaffold_168:1:1723178:1 REF
          Length = 1723178

 Score =  100 bits (250), Expect = 1e-20
 Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
 Frame = -3

Query: 105    QEPGENNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACPPVGE---SF 161
              QE  +N EIL++LK+VRPGNGF P F+L +K DVNG    ++F FLK   P   +   S 
Sbjct: 729744 QENLKNEEILASLKHVRPGNGFEPKFELLQKSDVNGKDAHSMFVFLKEKLPFPSDDPNSL 729565

Query: 162    GATSNRLFWEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRADILK 212
                    + W P+  NDI WNFEKFL+ PDG P  R+      SE+ ADI K
Sbjct: 729564 MTDPKCIIWSPVCRNDISWNFEKFLVGPDGVPFKRYSRNFLTSEIEADIKK 729412


>contig25406 dna:contig contig::contig25406:1:4055:1 REF
          Length = 4055

 Score = 97.1 bits (240), Expect = 2e-19
 Identities = 47/82 (57%), Positives = 56/82 (68%), Gaps = 4/82 (4%)
 Frame = -1

Query: 140 GDGEQA----LFTFLKNACPPVGESFGATSNRLFWEPLKVNDIKWNFEKFLLDPDGRPVM 195
           G GE A    L   L+++CPPVG+  G  S RLFWEPLK++DIKWNFEKFL+ PDG+PV 
Sbjct: 734 GGGESANVMRLRFALQSSCPPVGDDLGPASERLFWEPLKLSDIKWNFEKFLVGPDGKPVR 555

Query: 196 RWFPRVNVSEVRADILKYFHQL 217
           RW  RV VS VR  I  Y  +L
Sbjct: 554 RWLSRVEVSVVRRFITDYLRRL 489



 Score = 92.8 bits (229), Expect = 3e-18
 Identities = 53/131 (40%), Positives = 67/131 (51%), Gaps = 36/131 (27%)
 Frame = -2

Query: 24   LSNTQACNSAAGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQYV----- 78
            +S  Q C +    + + Y AKT+N ++ + FS Y G+ VL VN ATY  LT QYV     
Sbjct: 1711 VSLPQPCETDVNGTIYRYQAKTLNESRTVSFSEYVGQTVLFVNTATY*SLTNQYVGEH*I 1532

Query: 79   -------------------------------ELNALHEELRHLGFTILGFPCDQFGKQEP 107
                                           ELNALHEEL+  GFT+LGFPC+ FGKQEP
Sbjct: 1531 TLSSLSPP*TITPFLQLRGYTICTFFCLIPSELNALHEELKSYGFTVLGFPCNIFGKQEP 1352

Query: 108  GENNEILSALK 118
            G N+EIL  +K
Sbjct: 1351 GNNDEILPGIK 1319



 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
 Frame = -3

Query: 118 KYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLK-NACPPVG 158
           ++VRPG GFVP F LFE GDVNGD EQ ++TFLK +  PP G
Sbjct: 918 RHVRPGKGFVPTFPLFELGDVNGDQEQPVYTFLKASPLPPHG 793


>GeneScaffold_1971 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1971:1:1149007:1 REF
          Length = 1149007

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 32/119 (26%)
 Frame = -3

Query: 110    NNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNA--------CPPVGES- 160
              N+E L+ LKYVRPG GF+P F +F K +VNG  E+ LFT+LK          CP  G   
Sbjct: 939191 NSETLNILKYVRPGGGFIPKFPVFGKVEVNGLSEEPLFTYLKVTGSLLAYP*CPIYGNKI 939012

Query: 161    ---FGATSN--------------------RLFWEPLKVNDIKWNFEKFLLDPDGRPVMR 196
                 +   SN                    + +W P++VNDI+WNFE+FL+  DG P  R
Sbjct: 939011 LNIYSVKSNVY*SLQDSLPFVNPVIGDIKKFYWSPIRVNDIRWNFERFLITADGVPFRR 938835


>GeneScaffold_2821 dna:genescaffold genescaffold:gadMor1:GeneScaffold_2821:1:245547:1
            REF
          Length = 245547

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = -1

Query: 63   LVVNVATYXGLTFQ-YVELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSALKYVR 121
            LVVNVA+  G T + Y +L  L ++     F +L FPC+QFG+QEPG + EI S ++ V 
Sbjct: 7935 LVVNVASDCGFTEEHYRDLQQLQKDYGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRRV- 7759

Query: 122  PGNGFVPNFQLFEKGDVNGDGEQALFTFL 150
                +  +F LF K  V G G   ++ +L
Sbjct: 7758 ----YGVSFPLFSKIAVVGTGANNVYKYL 7684


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,969,367
Number of Sequences: 398859
Number of extensions: 3084013
Number of successful extensions: 10491
Number of sequences better than 1.0e-04: 5
Number of HSP's better than  0.0 without gapping: 8210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10487
length of query: 222
length of database: 277,371,529
effective HSP length: 117
effective length of query: 105
effective length of database: 230,705,026
effective search space: 24224027730
effective search space used: 24224027730
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)
