
genewise output
Score 13.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|237507238|gb   40 FVPNFLLF                                          
                     ++PNF ++                                          
                     YLPNFFMY                                          
contig25406:sub 2343 tccattat                                          
                     atcattta                                          
                     catcttgt                                          


//
>contig25406:subseq(0,4054).pep
YLPNFFMY
//
>contig25406:subseq(0,4054).[2343:2366].sp
TACCTACCTAACTTTTTTATGTAT
//
contig25406:subseq(0,4054)	GeneWise	match	2343	2366	13.81	+	.	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	cds	2343	2366	0.00	+	0	contig25406:subseq(0,4054)-genewise-prediction-1
//

genewise output
Score 175.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|237507238|gb    1 MKPLGLTLLGFPCNQFGKQEPGTNHEILPGL                   
                     +K  G T+LGFPCN FGKQEPG N EILPG+                   
                     LKSYGFTVLGFPCNIFGKQEPGNNDEILPGI                   
contig25406:sub-1414 cattgtagcgtctaatgacgcgaaggaccga                   
                     tacagtcttgtcgattgaaacgaaaattcgt                   
                     ggctacctcgtcttttaaaaagcttgcaata                   


gi|237507238|gb   32                           HVRPGNGFVPNFLLFEKGDVNGK 
                                               HVRPG GFVP F LFE GDVNG  
                                K:K[aaa]       HVRPGKGFVPTFPLFELGDVNGD 
contig25406:sub-1321 AAGTAAGTA  Intron 1   CAGAcgacgagtgcatcctgcgggagg 
                       <2-----[1319 :  917]-2> atgcgagttcctcttatgataga 
                                               caaaagatccgcggtgcttctat 


gi|237507238|gb   56 DEQEVFTFLKN                          -SCPPVGDVLGN 
                      EQ V+TFLK                            SCPPVGD LG  
                     QEQPVYTFLKA          -:K[aag]        !SCPPVGDDLGP 
contig25406:sub -846 cgccgtatcagAGTCCCCT  Intron 2   CAGAG1ttccggggcgc 
                     aaactacttac <1-----[812  :  687]-1>   cgcctgaatgc 
                     gaaggccccgg                           ccggccccgag 


gi|237507238|gb   78 PT-RMFWDPVKLSDIKWNFEKFLVGPDGKPVMRWHPSVNISVVQADIRK 
                      + R+FW+P+KLSDIKWNFEKFLVGPDGKPV RW   V +SVV+  I   
                     ASERLFWEPLKLSDIKWNFEKFLVGPDGKPVRRWLSRVEVSVVRRFITD 
contig25406:sub -650 gtgacttgccacagaatatgatcggcggacgaatttagggtggaataag 
                     ccagttgactatgatagataatttgcagactgggtcgtatcttggttca 
                     gcgggcgggcggcccggccggcggggtggacgggatgcaccccaaccac 


gi|237507238|gb  126 YLLQLYTQQ                                         
                     YL +L  Q+                                         
                     YLRRLPAQR                                         
contig25406:sub -503 tccctcgca                                         
                     atggtccag                                         
                     ccgtaacag                                         


//
Making a K in phase 2 intron
Making a K in phase 1 intron
>contig25406:subseq(0,4054).pep
LKSYGFTVLGFPCNIFGKQEPGNNDEILPGIKHVRPGKGFVPTFPLFELGDVNGDQEQPV
YTFLKAKXSCPPVGDDLGPASERLFWEPLKLSDIKWNFEKFLVGPDGKPVRRWLSRVEVS
VVRRFITDYLRRLPAQR
//
>contig25406:subseq(0,4054).[1414:683].sp
CTGAAGTCCTATGGATTCACCGTTCTCGGGTTTCCCTGTAATATTTTTGGAAAACAAGAA
CCAGGGAACAATGATGAGATCCTACCAGGTATAAAACACGTAAGACCAGGAAAGGGATTT
GTCCCCACGTTCCCGCTGTTTGAGCTCGGTGATGTCAATGGAGATCAGGAACAACCGGTG
TACACCTTCCTCAAGGCGAAG
>contig25406:subseq(0,4054).[683:475].sp
TCCTGCCCGCCGGTCGGCGACGACCTGGGACCGGCGTCCGAGAGGCTGTTCTGGGAGCCG
CTCAAGCTGAGCGACATCAAGTGGAACTTCGAGAAGTTCCTGGTGGGGCCGGATGGGAAG
CCAGTCAGGAGGTGGTTATCTAGGGTCGAAGTCTCCGTCGTCAGAAGATTCATCACAGAC
TACCTCCGGCGTTTACCAGCCCAAAGG
//
contig25406:subseq(0,4054)	GeneWise	match	1414	685	70.14	-	.	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	cds	1414	1320	0.00	-	0	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	intron	1319	917	0.00	-	.	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	cds	916	813	0.00	-	1	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	intron	812	687	0.00	-	.	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	cds	686	685	0.00	-	2	contig25406:subseq(0,4054)-genewise-prediction-1
contig25406:subseq(0,4054)	GeneWise	match	683	477	105.78	-	.	contig25406:subseq(0,4054)-genewise-prediction-2
contig25406:subseq(0,4054)	GeneWise	cds	683	477	0.00	-	0	contig25406:subseq(0,4054)-genewise-prediction-2
//
