TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169636422|ref|NP_001004634.2| glutathione peroxidase 1b
[Danio rerio]
         (190 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GeneScaffold_1266 dna:genescaffold genescaffold:gadMor1:GeneScaf...   221   5e-57
GeneScaffold_168 dna:genescaffold genescaffold:gadMor1:GeneScaff...   194   5e-49
GeneScaffold_1971 dna:genescaffold genescaffold:gadMor1:GeneScaf...    86   3e-16
contig311944 dna:contig contig::contig311944:1:640:1 REF               55   7e-07
GeneScaffold_3230 dna:genescaffold genescaffold:gadMor1:GeneScaf...    54   9e-07
GeneScaffold_2821 dna:genescaffold genescaffold:gadMor1:GeneScaf...    50   2e-05
contig411933 dna:contig contig::contig411933:1:1296:1 REF              50   2e-05
contig300910 dna:contig contig::contig300910:1:2822:1 REF              49   5e-05

>GeneScaffold_1266 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1266:1:488504:1 REF
          Length = 488504

 Score =  221 bits (562), Expect = 5e-57
 Identities = 110/228 (48%), Positives = 145/228 (63%), Gaps = 42/228 (18%)
 Frame = -1

Query: 5      KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVL 64
              K+FYD+ A TL G    F+  +G+VVLIENVASL GTT+RDY+++++L  ++  + LVVL
Sbjct: 477197 KTFYDLKATTLEGATVDFNVFRGRVVLIENVASL*GTTTRDYSELSQLQSKYPHR-LVVL 477021

Query: 65     GVPCNQFGYQ------------------------------------------ENCTNEEI 82
              G PCNQFGYQ                                          EN +N EI
Sbjct: 477020 GFPCNQFGYQVSSTAQ*DSTSDMPIEAFDL*PHLPLNALSKITVCVCVCHLQENLSNGEI 476841

Query: 83     LLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPFMSDPKFIIW 142
              L SLKYVRPG GYEP F + EK +VNG N HP+F +LK+KLP+P D+P   M DPK +IW
Sbjct: 476840 LNSLKYVRPGAGYEPGFTVFEKCEVNGANPHPVFAYLKDKLPYPEDDPNSLMQDPKHLIW 476661

Query: 143    SPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLSIPK 190
              +P+CRND++WNFEKFL+G +G PFKRYS++F T  I+ DI++LL + K
Sbjct: 476660 TPICRNDVSWNFEKFLVGPEGEPFKRYSKKFPTISIEPDIQRLLRLTK 476517


>GeneScaffold_168 dna:genescaffold genescaffold:gadMor1:GeneScaffold_168:1:1723178:1 REF
          Length = 1723178

 Score =  194 bits (493), Expect = 5e-49
 Identities = 90/117 (76%), Positives = 102/117 (87%)
 Frame = -3

Query: 74     QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133
              QEN  NEEIL SLK+VRPGNG+EPKF+LL+K DVNGK+AH +F FLKEKLPFPSD+P   
Sbjct: 729744 QENLKNEEILASLKHVRPGNGFEPKFELLQKSDVNGKDAHSMFVFLKEKLPFPSDDPNSL 729565

Query: 134    MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLSIPK 190
              M+DPK IIWSPVCRNDI+WNFEKFL+G DGVPFKRYSR FLTS I+ DIKKLLS+ K
Sbjct: 729564 MTDPKCIIWSPVCRNDISWNFEKFLVGPDGVPFKRYSRNFLTSEIEADIKKLLSLKK 729394



 Score =  104 bits (260), Expect = 6e-22
 Identities = 50/68 (73%), Positives = 59/68 (86%)
 Frame = -2

Query: 7      FYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGV 66
              F++ITAK LTGE   FSSL+GKVVLI+NVASL GTTSRDY QMNELH R++ +GLV+L V
Sbjct: 730276 FFEITAKRLTGEVLNFSSLKGKVVLIQNVASL*GTTSRDYLQMNELHARYSGQGLVILAV 730097

Query: 67     PCNQFGYQ 74
              PCNQFG+Q
Sbjct: 730096 PCNQFGHQ 730073


>GeneScaffold_1971 dna:genescaffold genescaffold:gadMor1:GeneScaffold_1971:1:1149007:1 REF
          Length = 1149007

 Score = 85.9 bits (211), Expect = 3e-16
 Identities = 50/123 (40%), Positives = 62/123 (50%), Gaps = 33/123 (26%)
 Frame = -3

Query: 79     NEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLK------------------ 120
              N E L  LKYVRPG G+ PKF +  KV+VNG +  PLFT+LK                  
Sbjct: 939191 NSETLNILKYVRPGGGFIPKFPVFGKVEVNGLSEEPLFTYLKVTGSLLAYP*CPIYGNKI 939012

Query: 121    ---------------EKLPFPSDEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVP 165
                             + LPF +    P + D K   WSP+  NDI WNFE+FLI +DGVP
Sbjct: 939011 LNIYSVKSNVY*SLQDSLPFVN----PVIGDIKKFYWSPIRVNDIRWNFERFLITADGVP 938844

Query: 166    FKR 168
              F+R
Sbjct: 938843 FRR 938835


>contig311944 dna:contig contig::contig311944:1:640:1 REF
          Length = 640

 Score = 54.7 bits (130), Expect = 7e-07
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = -3

Query: 23  SSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQ 74
           S  +G V +I NVAS  G T  +YTQ  E+H ++A+K L +LG PCNQFG Q
Sbjct: 488 SLTRGCVCIITNVASK*GKTRVNYTQFAEMHVKYADKDLHILGFPCNQFGAQ 333


>GeneScaffold_3230 dna:genescaffold genescaffold:gadMor1:GeneScaffold_3230:1:185225:1 REF
          Length = 185225

 Score = 54.3 bits (129), Expect = 9e-07
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +1

Query: 23    SSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQ 74
             S  +G V +I NVAS  G T  +YTQ  E+H ++A+K L +LG PCNQFG Q
Sbjct: 44257 SLTRGCVCIITNVASK*GKTRVNYTQFAEMHVKYADKDLHILGFPCNQFGGQ 44412


>GeneScaffold_2821 dna:genescaffold genescaffold:gadMor1:GeneScaffold_2821:1:245547:1
            REF
          Length = 245547

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 31/92 (33%), Positives = 47/92 (51%)
 Frame = -1

Query: 28   KVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLK 87
            +V L+ NVAS  G T   Y  + +L + +      VL  PCNQFG QE  +++EI   ++
Sbjct: 7944 QVSLVVNVASDCGFTEEHYRDLQQLQKDYGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVR 7765

Query: 88   YVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFL 119
             V     Y   F L  K+ V G  A+ ++ +L
Sbjct: 7764 RV-----YGVSFPLFSKIAVVGTGANNVYKYL 7684


>contig411933 dna:contig contig::contig411933:1:1296:1 REF
          Length = 1296

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 26  QGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQ 74
           +G+VV+I NVAS  G T  +Y+Q  E+H +++E+GL +L  P NQF  Q
Sbjct: 250 RGEVVIITNVASK*GKTPVNYSQFAEMHAKYSERGLRILAFPSNQFANQ 396


>contig300910 dna:contig contig::contig300910:1:2822:1 REF
          Length = 2822

 Score = 48.5 bits (114), Expect = 5e-05
 Identities = 30/89 (33%), Positives = 36/89 (40%)
 Frame = -1

Query: 31   LIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLKYVR 90
            L+ NVAS    T  +Y  + ELH         VL  PC QFG  E     EI    K   
Sbjct: 1274 LVVNVASQSEQTEENYRSLQELHRELGTSHFNVLAFPCGQFGLTEPWGTREIEAFAK--- 1104

Query: 91   PGNGYEPKFQLLEKVDVNGKNAHPLFTFL 119
              + Y   F    K+ + G  A P F FL
Sbjct: 1103 --STYGVTFPFFSKIKIMGSEADPAFKFL 1023


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.320    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,070,924
Number of Sequences: 398859
Number of extensions: 2704716
Number of successful extensions: 9160
Number of sequences better than 1.0e-04: 8
Number of HSP's better than  0.0 without gapping: 7325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9155
length of query: 190
length of database: 277,371,529
effective HSP length: 115
effective length of query: 75
effective length of database: 231,502,744
effective search space: 17362705800
effective search space used: 17362705800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)
