TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|307746900|ref|NP_001182711.1| fep15 selenoprotein precursor
[Salmo salar]
         (137 letters)

Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa 
           398,859 sequences; 832,114,588 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig85073 dna:contig contig::contig85073:1:1313:1 REF                76   8e-14
GeneScaffold_3251 dna:genescaffold genescaffold:gadMor1:GeneScaf...    53   8e-07

>contig85073 dna:contig contig::contig85073:1:1313:1 REF
          Length = 1313

 Score = 76.3 bits (186), Expect = 8e-14
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +1

Query: 90  QTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPEEFQHFPLRAPRDEL 137
           Q+VPVK+M  D I  LL++ GFY+RSQKGEEVPEEFQ+FPL APRDEL
Sbjct: 64  QSVPVKEMTADAIGQLLEARGFYRRSQKGEEVPEEFQNFPLHAPRDEL 207


>GeneScaffold_3251 dna:genescaffold genescaffold:gadMor1:GeneScaffold_3251:1:202163:1 REF
          Length = 202163

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 65     HNLEYDSGEEKNPRLIFYDDKDEVVQ 90
              HNLEYDS EEK PRLIFYDD+DEVVQ
Sbjct: 180021 HNLEYDSSEEKEPRLIFYDDRDEVVQ 180098


  Database: /cursos/BI/genomes/project_2013/Gadus_morhua/genome.fa
    Posted date:  Oct 24, 2012  8:34 PM
  Number of letters in database: 832,114,588
  Number of sequences in database:  398,859
  
Lambda     K      H
   0.317    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,511,686
Number of Sequences: 398859
Number of extensions: 895876
Number of successful extensions: 2749
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 2506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2749
length of query: 137
length of database: 277,371,529
effective HSP length: 108
effective length of query: 29
effective length of database: 234,294,757
effective search space: 6794547953
effective search space used: 6794547953
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)
