
genewise output
Score 86.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|307746900|re   90 QTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPEEFQHFPLRAPRDEL  
                     Q+VPVK+M  D I  LL++ GFY+RSQKGEEVPEEFQ+FPL APRDEL  
                     QSVPVKEMTADAIGQLLEARGFYRRSQKGEEVPEEFQNFPLHAPRDEL  
contig85073       64 ctgcgagaagggagcccggcgttaaacaggggcggtcatcccgcaggc  
                     actctaatccactgattacggtagggaagaatcaataatctaccgaat  
                     ggctgaggagccccggggccaccggcggaggtcggcgcccgcccacgc  


//
>contig85073.pep
QSVPVKEMTADAIGQLLEARGFYRRSQKGEEVPEEFQNFPLHAPRDEL
//
>contig85073.[64:207].sp
CAGTCGGTCCCTGTGAAAGAGATGACAGCGGACGCCATCGGCCAGCTGCTGGAGGCCCGC
GGATTCTACAGGAGGAGCCAGAAGGGAGAGGAGGTTCCCGAGGAGTTCCAGAACTTCCCC
CTGCACGCCCCCAGAGACGAGCTC
//
contig85073	GeneWise	match	64	207	86.52	+	.	contig85073-genewise-prediction-1
contig85073	GeneWise	cds	64	207	0.00	+	0	contig85073-genewise-prediction-1
//

genewise output
Score 12.94 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|307746900|re   47 IKKMPALYMFLMERWALYHNLEY                           
                     I  M  + +F++    ++HNL +                           
                     ILSMEPIQIFIIITPHIFHNLYF                           
contig85073     -418 actagcacataaaaccatcattt                           
                     ttctactatttttccattaatat                           
                     ttaggataattcaaatttctatt                           


//
>contig85073.pep
ILSMEPIQIFIIITPHIFHNLYF
//
>contig85073.[418:348].sp
ATTCTTTCAATGGAGCCAATTCAAATATTTATTATCATAACACCACATATTTTTCACAAT
TTATATTTT
//
contig85073	GeneWise	match	418	350	12.94	-	.	contig85073-genewise-prediction-1
contig85073	GeneWise	cds	418	350	0.00	-	0	contig85073-genewise-prediction-1
//


genewise output
Score 69.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|315221161|re   47 SIKKMPELYNFLMERWAL                          HNLEY 
                     SIKKMPEL+ FLMERWAL                          HNLEY 
                     SIKKMPELHQFLMERWAL           Y:Y[tac]       HNLEY 
GeneScaffold_3220021 aaaaacgccctcagctgcTAGTATCCT  Intron 1   TAGCcacgt 
                     gtaatcataatttaggct  <2-----[20077:20793]-2> aataa 
                     ccggggaccacgggcgag                          tcggt 


gi|315221161|re   71 DSGEDKNPRLIFYNDKDEEVKV                            
                     DS E+K PRLIFY+D+DE V+V                            
                     DSSEEKEPRLIFYDDRDEVVQV                            
GeneScaffold_3220810 gttggagcccattggaggggcg                            
                     accaaaacgtttaaagaattat                            
                     tcgggggctgccctcgcggggg                            


//
Making a Y in phase 2 intron
>GeneScaffold_3251:subseq(159226,30000).pep
SIKKMPELHQFLMERWALYHNLEYDSSEEKEPRLIFYDDRDEVVQV
//
>GeneScaffold_3251:subseq(159226,30000).[20021:20875].sp
AGCATCAAGAAGATGCCGGAACTCCACCAATTCCTGATGGAGCGCTGGGCACTGTACCAT
AACCTGGAGTATGATTCCTCGGAGGAGAAGGAGCCCCGTCTGATCTTCTACGATGACAGG
GACGAGGTGGTGCAGGTG
//
GeneScaffold_3251:subseq(159226,30000)	GeneWise	match	20021	20875	69.42	+	.	GeneScaffold_3251:subseq(159226,30000)-genewise-prediction-1
GeneScaffold_3251:subseq(159226,30000)	GeneWise	cds	20021	20076	0.00	+	0	GeneScaffold_3251:subseq(159226,30000)-genewise-prediction-1
GeneScaffold_3251:subseq(159226,30000)	GeneWise	intron	20077	20793	0.00	+	.	GeneScaffold_3251:subseq(159226,30000)-genewise-prediction-1
GeneScaffold_3251:subseq(159226,30000)	GeneWise	cds	20794	20875	0.00	+	1	GeneScaffold_3251:subseq(159226,30000)-genewise-prediction-1
//

genewise output
Score 15.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|315221161|re   71 DSGEDKNPRLIFYNDKDEEVKVVPV                         
                     DS  D+  ++ F N+K   V VV V                         
                     DSHTDRGKQVCFLNNKAALVVVVVV                         
GeneScaffold_3-15182 gtcagagacgttcaaaggcgggggg                         
                     acacaggaatgttaaaccttttttt                         
                     ttcgcgaaagtcgccatctttttta                         


//
>GeneScaffold_3251:subseq(159226,30000).pep
DSHTDRGKQVCFLNNKAALVVVVVV
//
>GeneScaffold_3251:subseq(159226,30000).[15182:15106].sp
GATTCTCACACGGACAGGGGAAAACAAGTGTGTTTCCTGAACAACAAAGCTGCCCTTGTT
GTTGTTGTTGTTGTA
//
GeneScaffold_3251:subseq(159226,30000)	GeneWise	match	15182	15108	15.57	-	.	GeneScaffold_3251:subseq(159226,30000)-genewise-prediction-1
GeneScaffold_3251:subseq(159226,30000)	GeneWise	cds	15182	15108	0.00	-	0	GeneScaffold_3251:subseq(159226,30000)-genewise-prediction-1
//
