
genewise output
Score 149.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|52630451|ref   52 RMLTTAGVRSIWNSFLLDAYKQVKLGEAAPNSKVVKVTGINRCWSISGK 
                     +M T   +R++W    LD +K   +G +APN++VV V             
                     KMFTLESLRAVWYGQKLDFFKAAHVGHSAPNTEVVAV-----------Q 
contig121407:su  229 aatacgtccggttgcacgttaggcggcagcaaggggg           c 
                     attctactgctgagaatattaccatgagccacattct           a 
                     ggccggggccggcggagctcaggctcccgcccggggg           g 


gi|52630451|ref  101 THNQCHLLDFESPDRPLVVNFGSATXPPFISQLPVFRRMVEEFSDVADF 
                           +LD     RPL++NFGS +XPPF+++L  FRR+  +++D+AD  
                     DRQTLRILDCMRGKRPLILNFGSCSXPPFMTRLAAFRRVASQYADIADS 
contig121407:su  343 gccaccacgtacgaaccacatgatttcctaaccggtccggactggaggt 
                     agactgttagtggagctttatgggcgccttcgtcctggtcgaacatcac 
                     ccgcgccgccggcgggctgctccccaggcggcgcgcgcggcgcgccgcg 


gi|52630451|ref  150 LLVYIDEAHPSDGWVGPPMENFSFEVRKHRNLEERMFAARTLLEHFSLP 
                     LLVYI+EAHPSDGWV     +  +++ KHR +E+R+ AA+ +L       
                     LLVYIEEAHPSDGWVS---SDAPYQIPKHRCIEDRLRAAQLMLSEV--- 
contig121407:su  490 ccgtagggcctggtga   tggctcacacctaggcccggccactgg    
                     tttataacaccaggtg   caccaatcaaggtaagtgccatttcat    
                     gcgccgggtgcccggc   ccggcgccgccccgcgccggggggcgg    


gi|52630451|ref  199 PQCQLVADCMDNNANIAYGVSYERVCIVQKNKIAYLGGKGPFFYNLKDV 
                     P  Q+V D MDN++N AYG  +ER+ I++  ++ Y GG+GP  Y + ++ 
                     PGSQVVIDTMDNSSNAAYGAYFERLYILRDQRVVYQGGRGPEGYRISEL 
contig121407:su  619 cgacggagaagattaggtggttgactatagccggtcggcgcggtcatgc 
                     cggatttactaaccaccagcatagtattgaagttaaggggcagagtcat 
                     gccgggctcgccgccggcccctgatccggcgtgccgccgtcggccaggc 


gi|52630451|ref  248 RRWLEK                                            
                     R WLE+                                            
                     RDWLEQ                                            
contig121407:su  766 agtcgc                                            
                     gagtaa                                            
                     atggga                                            


//
>contig121407:subseq(0,1276).pep
KMFTLESLRAVWYGQKLDFFKAAHVGHSAPNTEVVAVQDRQTLRILDCMRGKRPLILNFG
SCSXPPFMTRLAAFRRVASQYADIADSLLVYIEEAHPSDGWVSSDAPYQIPKHRCIEDRL
RAAQLMLSEVPGSQVVIDTMDNSSNAAYGAYFERLYILRDQRVVYQGGRGPEGYRISELR
DWLEQ
//
>contig121407:subseq(0,1276).[229:783].sp
AAGATGTTCACCCTGGAGTCGCTGCGCGCCGTGTGGTACGGGCAGAAACTGGACTTTTTC
AAAGCGGCGCACGTTGGCCACAGCGCGCCCAACACCGAGGTGGTGGCGGTGCAGGACCGC
CAGACCCTGCGCATCCTGGACTGCATGCGGGGCAAGAGGCCGCTCATTCTGAACTTTGGC
AGCTGCTCCTGACCGCCGTTCATGACGCGCCTGGCCGCGTTCCGGCGCGTGGCGAGCCAG
TACGCGGACATCGCGGACTCGCTGCTCGTGTACATCGAGGAGGCGCATCCGTCCGACGGC
TGGGTGAGCTCCGACGCGCCGTACCAGATCCCCAAGCACCGCTGCATCGAGGACCGGCTC
CGCGCGGCGCAGCTGATGCTGTCCGAGGTGCCGGGCAGCCAGGTGGTGATCGATACCATG
GACAACTCGTCCAACGCGGCGTACGGCGCCTACTTTGAGAGACTTTACATCTTGAGGGAC
CAGCGTGTGGTCTACCAGGGCGGCCGGGGTCCCGAGGGGTACCGCATATCGGAGCTCAGA
GATTGGCTGGAGCAA
//
contig121407:subseq(0,1276)	GeneWise	match	229	783	163.41	+	.	contig121407:subseq(0,1276)-genewise-prediction-1
contig121407:subseq(0,1276)	GeneWise	cds	229	783	0.00	+	0	contig121407:subseq(0,1276)-genewise-prediction-1
//

genewise output
Score 13.02 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|52630451|ref   93 RCWSISGK                                          
                     RCW+  G+                                          
                     RCWARCGQ                                          
contig121407:su -325 cttgctgc                                          
                     gggcggga                                          
                     gtggctca                                          


//
>contig121407:subseq(0,1276).pep
RCWARCGQ
//
>contig121407:subseq(0,1276).[325:300].sp
CGGTGTTGGGCGCGCTGTGGCCAA
//
contig121407:subseq(0,1276)	GeneWise	match	325	302	13.02	-	.	contig121407:subseq(0,1276)-genewise-prediction-1
contig121407:subseq(0,1276)	GeneWise	cds	325	302	0.00	-	0	contig121407:subseq(0,1276)-genewise-prediction-1
//
