T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=56
*
 BAD AVG GOOD
*
JH205199.1_subs   :  56
gi|255760061|re   :  56
cons              :  56

JH205199.1_subs   MAPKGRKRKAKEPKVKSANLEDEKSRVPGUGKSGPWTSCGHUALX
gi|255760061|re   MASRGRKRKAEAALAAAAEK-REKPA-------------------

cons              **.:******: . . :*:   **.                    


JH205199.1_subs   XXXXXXXXCRCPEPGAAPRCLQCGGGDUPUDATQEQLRGVPGEGG
gi|255760061|re   ---------------------------------GGQEGGVEGPSV

cons                                                 *  ** * . 


JH205199.1_subs   RKQSRPLPU---ARRCAALSPVW-------------------WWR
gi|255760061|re   VIEH-CTSURVYGRNAAALSQALRLQAPELTVKVNPARPRRGSFE

cons                :    .*   .*..**** .                     :.


JH205199.1_subs   LTLRRHAGTASRCPWURRTEARWSYGAASRKGHLASLSSQSRRKW
gi|255760061|re   VTLLRADGSSA----------------------------------

cons              :** *  *:::                                  


JH205199.1_subs   RTCURAAURQAUGQPHSSCLUPQAAKAVPGXGKSGPWTSCGHUAL
gi|255760061|re   ---------------------------------------------

cons                                                           


JH205199.1_subs   XXXXXXXXXXXXREPGAAPRCLQCGGGDUPUDATQEQLRGVPGEG
gi|255760061|re   ---------------------------------------------

cons                                                           


JH205199.1_subs   GRKQURWSYGAASRKGHLASLSSQSRRKWRTCURAAUEAWQGALK
gi|255760061|re   -------------------------------------ELWTGLKK

cons                                                   * * *  *


JH205199.1_subs   LPPUEVGFPFPP----------I
gi|255760061|re   GPPRKLKFPEPHVVLEELKKYLS

cons               ** :: ** *