T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
gi|71896586|ref   :  99
JH224651.1_subs   :  99
cons              :  99

gi|71896586|ref   MNTENFGSSERLVTAAYVRQGAQGRRGHELLLRALLEQGKCPEDG
JH224651.1_subs   MNVENFGASERLVNAAYMRQGAQGRRAHELRLRALLEQGKCPEDG

cons              **.****:*****.***:********.*** **************


gi|71896586|ref   WDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVARRHYR
JH224651.1_subs   WDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVARRHYR

cons              *********************************************


gi|71896586|ref   LIHGIGRSGDISAVQPKAAGSSLLNKLTNSVVLDIIKQAGVRTVT
JH224651.1_subs   LIHGIGRSGDISAVQPKAAGSSLLNKLTNSIVLDILKLAGVRTVT

cons              ******************************:****:* *******


gi|71896586|ref   NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
JH224651.1_subs   SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI

cons              .********************************************


gi|71896586|ref   TAGFEPVVIENVLEGDELRTDIEAVEAKIKTLGAENILCVHSTTS
JH224651.1_subs   TAGFEPVVIENVLEGDELRTDIKAVEAKIQDLGAENVLCVHSTTS

cons              **********************:******: *****:********


gi|71896586|ref   CFAPRVPDRLEELAIICANYDIPHIVNNAYGVQSSKCMHLIQQGA
JH224651.1_subs   CFAPRVPERLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGA

cons              *******:******:******************************


gi|71896586|ref   RVGRIDAFVQSLDKNFMVPVGGAIIAGFNESFIQEISKMYPGR-A
JH224651.1_subs   RVGRIDAFIQSLDKNFMVPVGGAVIAGFDDSFIQDISKMYPGKXF

cons              ********:**************:****::****:*******:  


gi|71896586|ref   SASPSLDVLITLLSLGASGYKQLLKERKEMFSYLSSELKKLADIH
JH224651.1_subs   I-QSSLDVLITLLSLGESGYRQLLKERKEMFSYLSSQLKKLAEVY

cons                ..************ ***:***************:*****:::


gi|71896586|ref   NERLLDTPHNPISLAMSLKNLDENNDAAVTQLGSMLFTRQVSGAR
JH224651.1_subs   NERLLVTPHNPISLAMTLENLDKHSDMTVTQLGSMLFTRQVSGAR

cons              ***** **********:*:***::.* :*****************


gi|71896586|ref   VVPRGSVQTVNNYTFKGFMSHTNDYPCAYLNAASAIGIKKQDVDI
JH224651.1_subs   VVPLGASQTVNNYTFKGFMSHTNNYPCAYLNAASAIGMKKQDVDL

cons              *** *: ****************:*************:******:


gi|71896586|ref   FLKRLDKCLKASRKGKEKSVNEICTSNTGTEQLEDQKIQT
JH224651.1_subs   FLKRLEKCMKNFRKE------------------------K

cons              *****:**:*  **                         .