T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=84
*
 BAD AVG GOOD
*
gi|8923460|ref|   :  84
JH207279.1_subs   :  84
cons              :  84

gi|8923460|ref|   MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPA
JH207279.1_subs   ------------------VSRAFATMEELVLSVKIIRNRLTGIPA

cons                                :******* * *:**************


gi|8923460|ref|   GYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQP
JH207279.1_subs   GCCFVELADLATAEERSHKINGNPLPGATPAMRFKLNYATYGKQP

cons              * ****:*******:  *****:******** *************


gi|8923460|ref|   DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGV
JH207279.1_subs   DNSPEYSLFVGDLTPDVDDGMLDEVSVK---SCRGGKVVLDQMGV

cons              ********************** *. **   *********** **


gi|8923460|ref|   SKGYGFVKFTDELEQKRALTECQG-AVGLGS--------------
JH207279.1_subs   SKGYGFVKFTDELEQKRALTELWDWALNLYAUVWPCPKLTVURQW

cons              *********************  . *:.* :              


gi|8923460|ref|   KPVRL-SVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGY
JH207279.1_subs   NTIRCAAIIIPSIT-------------------------------

cons              :.:*  :: **. :                               


gi|8923460|ref|   DQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEAN
JH207279.1_subs   ---------------------------------------------

cons                                                           


gi|8923460|ref|   KEFMEQSEELYDALMDCHWQPLDTVSSEIP-AMM
JH207279.1_subs   ----------------------NNIRTTMPSGDT

cons                                    :.: : :* .