T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=94
*
 BAD AVG GOOD
*
gi|363744499|re   :  94
JH211314.1_subs   :  94
cons              :  94

gi|363744499|re   MFAERFPGRGSEGIELSAEVKPFVPKYAAVTVAWSEPSAACVFPR
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   YLTTGYTFVQEPSLDNVVRDPALHENSSSSCSPDVSNSNPVAASQ
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   CHSYGSTYCNGSRIVSESAEQKYPIRQESKSLSKQRKAKESEKKS
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   DKKNQDEEDSSASTVKRTALQTSAGSRDSVKPDRFNKTASKKSTQ
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   APKIEPFPVSAFETTIVDFHKLQSLRSSEILNAHRKNGPACSVES
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   NIMCLSQPQMSPLLNTELSSGKCFYSHSYDTREDVSVESIASSKA
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   LKETVASLIPSSFDSGVFPEKSTDGSAQPCVSWAMVLSQPPKKTF
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   SSPASECFPRYKGKQDSQAKEETKNGGSETEPEEGSEKKKKKRKK
JH211314.1_subs   ---------------------------------------------

cons                                                           


gi|363744499|re   KKKNKSPTNVEKPHNESTTVQEPPRIEDAEEFPDLAAASDGRKRL
JH211314.1_subs   --------------------------XDAEEFPDLASASDRTNRV

cons                                         *********:***  :*:


gi|363744499|re   GSQKTSLTP-AGRKQAEIHLPRVSCNSCSSTVDGALKVDVLSGKQ
JH211314.1_subs   GTQKSTYTPPVNRIQPEVPLTRESCDASNFGVP--VIAGKKPGKQ

cons              *:**:: ** ..* *.*: *.* **::..  *   : ..  .***


gi|363744499|re   ASSFMLEKKKMQETSKSGGKKSQIPVQLDLGGMLAVLEQKQQTEK
JH211314.1_subs   ASSATLERKKTQEATKGSGKKSQIPMQLDLGGMLAVLEQKQYAEK

cons              ***  **:** **::*..*******:*************** :**


gi|363744499|re   SKQYSKSVVFSVAGAIPLLSKESATATKNHRLNQGKMPHNPLDSS
JH211314.1_subs   SKQSSKPVVLSVGGAIPMLSKEPTTVTKNQQLNQGKTPHNPLDSS

cons              *** **.**:**.****:****.:*.***::***** ********


gi|363744499|re   APLVKKGKQREVPKAKRPTPLKKIILKERELRKQQHLLEQTAVPK
JH211314.1_subs   APLVKKGKQREVPKAKKPTSLKKIILKEREQRK-QHLLEQEAVPK

cons              ****************:**.********** ** ****** ****


gi|363744499|re   DGGNCCVS-AENTTGDEALPQDSQAVVPVMQVAEGLLGSTKMKES
JH211314.1_subs   DDGDTVHQCEESATEDQTHSQDTSTVAVAQIRTEVFLEHEELTDS

cons              *.*:   .  *.:* *:: .**:.:*. .   :* :*   ::.:*


gi|363744499|re   TESSVTSKQSTSNLPKIHSRRFRDYCSQVLSKEVDSCVTDLLKEL
JH211314.1_subs   TESTSTLTQLNSSLPKIHSRKFRDYCSQVLSKEVDSCVTDLLKEL

cons              ***: * .* .*.*******:************************


gi|363744499|re   VRFQDRLYQKDPVKAKIKRRLVMGLREVLKHLRLKKLKCVIISPN
JH211314.1_subs   VRFQDRLYQKDPVKAKTKRRLVMGLREVLKHLKLKKLKCVIISPN

cons              **************** ***************:************


gi|363744499|re   CEKIQSKGGLDETLHNIIDCACEQNIPFVFALNRKALGRCVNKAV
JH211314.1_subs   CEKIQSKGGLDETLHAIIDCACEQNIPFVFALNRKALGRCVNKAV

cons              *************** *****************************


gi|363744499|re   PVSVVGIFSYDGAQDHFHRMVQLTTEARKAYKDMVAALEEEA-EG
JH211314.1_subs   PVSVVGIFSYDGAQDHFHKMVELTMEARHAYKDMVAALEEEAAEG

cons              ******************:**:** ***:************* **


gi|363744499|re   --RQTETKLSIVTTELEKSCLSETGKTSSRDQDEDIPNYIKIWKK
JH211314.1_subs   GGSEKEKQSIILSTQCEEKSLPKTGQTPHVESDEDVPNYIKIWKR

cons                 :.*.:  *::*: *:..*.:**:*.  :.***:********:


gi|363744499|re   KLEEEYNPYALELEKSAAADMVVLNSEEHH
JH211314.1_subs   KLEEEYNPYALELEKNATTEI--------L

cons              ***************.*::::