SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Selenoprotein I (SelI)
| DESCRIPCIÓN | Duplicación fragmento Selenoproteína I. 1(-):56656446...56656273. |
| SECISearch | Sin resultados. |
| SELENOPROFILES | No encontrada. |
| COMENTARIOS | Elección: Exonerate. Descartamos la presencia de la Selenoproteína I en el cromosoma 1, ya que viendo el Multiple-alignment no hay ninguna predicción que contenga la región con la Selenocisteína. Podría tratarse de una región del genoma con homología con parte de Sel I. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=81, Nseq=9, Len=424
SPP00000015_1.0 MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVK----VFPTWLAPNLITFS
SPP00000015_1.0.1.exonerate ------------------------------------------------------------
SPP00000015_1.0.1.genewise ------------------------------------------------------------
SPP00000088_1.0 MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVK----FVPKWLAPNVLTFV
SPP00000088_1.0.1.exonerate ------------------------------------------------------------
SPP00000088_1.0.1.genewise ------------------------------------------------------------
SPP00000111_1.0 MAGYEYVSPEQLSGFDKYKYSALDTNPLSLYIMHPFWNTIVKKKKQVFPTWLAPNLITFS
SPP00000111_1.0.1.exonerate ------------------------------------------------------------
SPP00000111_1.0.1.genewise ------------------------------------------------------------
SPP00000015_1.0 GFLLVVFNFLLMAYFDPDFYAS-APGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTN
SPP00000015_1.0.1.exonerate --LCLLLTGTLRLFQETEFYIS-ATGSRSAPFWAYLLGALGLFIYQSLDAIDGKQARRTN
SPP00000015_1.0.1.genewise ------------------------------PFWAYLLGALGLFIYQSLDAIDGKQARRTN
SPP00000088_1.0 GFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILIYYNLDGMDGKQARRTG
SPP00000088_1.0.1.exonerate ------------------------EKAEKAPFWAYLLGALGLFIYQSLDAIDGKQARRTN
SPP00000088_1.0.1.genewise ------------------------------PFWAYLLGALGLFIYQSLDAIDGKQARRTN
SPP00000111_1.0 GFMLLVFNFLLLTYFDPDFYAS-APGHKHVPDWVWIVVGILNFAAYTLDGVDGKQARRTN
SPP00000111_1.0.1.exonerate --LCLLLTGTLRLFQETEFYIS-ATGSRSAPFWAYLLGALGLFIYQSLDAIDGKQARRTN
SPP00000111_1.0.1.genewise ------------------------------PFWAYLLGALGLFIYQSLDAIDGKQARRTN
* *.: : .: : .**.:********.
SPP00000015_1.0 SSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKY
SPP00000015_1.0.1.exonerate SSSPLGELFDHGCDSISTVFVVLGSC-IAIR--LGTNPDWLFFCCFVGLFMFYSAHWQTY
SPP00000015_1.0.1.genewise SSSPLGELFDHGCDSISTVFVVLGSC-IAIR--LGTNPDWLFFCCFVGLFMFYSAHWQTY
SPP00000088_1.0 TSGPLGELFDHGLDSYSAALIPIYLFSLF--GTHDLPPIRMFFVIWNVFLNFYLTHVEKY
SPP00000088_1.0.1.exonerate SSSPLGELFDHGCDSISTALISFS-C-FSCG-AIDRPRTEVLCCCWHTYWCFTLMQISKR
SPP00000088_1.0.1.genewise SSSPLGELFDHGCDSISTGSLNLLL-----------------------------------
SPP00000111_1.0 SSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFILSHWEKY
SPP00000111_1.0.1.exonerate SSSPLGELFDHGCDSISTVFVVLGSC-IAIR--LGTNPDWLFFCCFVGLFMFYSAHWQTY
SPP00000111_1.0.1.genewise SSSPLGELFDHGCDSISTVFVVLGSC-IAIR--LGTNPDWLFFCCFVGLFMFYSAHWQTY
:* ********* ** * . .
SPP00000015_1.0 NTGILFLPWGYDISQ--VTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCV
SPP00000015_1.0.1.exonerate VSGILRFG-KVDVTEVQIAITVLLLVSAFCGTAIWDYKFTLNKLRRDFFTDRVFSCHACP
SPP00000015_1.0.1.genewise VSGI--------------------------------------------------------
SPP00000088_1.0 NTGVMFLPWGYDFTM--WGVSGMLFVATVFGPEMY-RFSIYGFTMANMFEFVLIGSGMVS
SPP00000088_1.0.1.exonerate FTKILYIL----------------------------------------------------
SPP00000088_1.0.1.genewise ------------------------------------------------------------
SPP00000111_1.0 NTGVLFLPWGYDISQ--VTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCV
SPP00000111_1.0.1.exonerate VSGILRFG-KVDVTEVQIAITVLLLVSAFCGTAIWDYKFTLNKLRRDFFTDRVFSCHACP
SPP00000111_1.0.1.genewise VSGI--------------------------------------------------------
SPP00000015_1.0 TLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFY
SPP00000015_1.0.1.exonerate LLVFHLNANFKKIYKNTLYFVGP-------------------------------------
SPP00000015_1.0.1.genewise ------------------------------------------------------------
SPP00000088_1.0 SHPIIARNIYLSYKNKTGKMRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILW
SPP00000088_1.0.1.exonerate ----------------------W-------------------------------------
SPP00000088_1.0.1.genewise ----------------------H-------------------------------------
SPP00000111_1.0 TLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWSPSDILEIHPRIFY
SPP00000111_1.0.1.exonerate LLVFHLNANFKKIYKNTLYFVGP-------------------------------------
SPP00000111_1.0.1.genewise ------------------------------------------------------------
SPP00000015_1.0 FMVGTAFANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLV--------VNL-GVASYVES
SPP00000015_1.0.1.exonerate ------------------------------------------------------------
SPP00000015_1.0.1.genewise ------------------------------------------------------------
SPP00000088_1.0 ILYGTIFSNIACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTER
SPP00000088_1.0.1.exonerate ------------------------------------------------------------
SPP00000088_1.0.1.genewise ------------------------------------------------------------
SPP00000111_1.0 FMVGTAFANITCQLIVCQMSSTRCPTLNWLLLPLLLVVAA--------VIVGAATSRLES
SPP00000111_1.0.1.exonerate ------------------------------------------------------------
SPP00000111_1.0.1.genewise ------------------------------------------------------------
SPP00000015_1.0 ILLYTLTTAFTLAHIHYGVRVVKQLSSHFQIYPFSLRKPNSDULGMEEKN----------
SPP00000015_1.0.1.exonerate ------------------------------------------------------------
SPP00000015_1.0.1.genewise ------------------------------------------------------------
SPP00000088_1.0 WILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQ-SGSDITQLLQNNNKIKP
SPP00000088_1.0.1.exonerate ------------------------------------------------------------
SPP00000088_1.0.1.genewise ------------------------------------------------------------
SPP00000111_1.0 ALLYTLTAAFTLAHIHYGVQVVKQLSRHFQIYPFSLRKPNSDULGMEEQN----------
SPP00000111_1.0.1.exonerate ------------------------------------------------------------
SPP00000111_1.0.1.genewise ------------------------------------------------------------
SPP00000015_1.0 -IGL
SPP00000015_1.0.1.exonerate --FE
SPP00000015_1.0.1.genewise ---L
SPP00000088_1.0 LKSH
SPP00000088_1.0.1.exonerate --GH
SPP00000088_1.0.1.genewise --IL
SPP00000111_1.0 -IGL
SPP00000111_1.0.1.exonerate --FE
SPP00000111_1.0.1.genewise ---L
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54 SCORE=98, Nseq=2, Len=414
SPP00000088_1.0 MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAPNVLTFVGFLM
SPP00000088_1.0.1.exonerate ------------------------------------------------------------
SPP00000088_1.0 TVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILIYYNLDGMDGKQARRTGTSGP
SPP00000088_1.0.1.exonerate --------------------EKAEKAPFWAYLLGALGLFIYQSLDAIDGKQARRTNSSSP
*..:..* *.: :.*:.::** .**.:********.:*.*
SPP00000088_1.0 LGELFDHGLDSYSAALIPIYLFSLFGTHDLPPIRMFFVIWNVFLNFYLTHVEKYNTGVMF
SPP00000088_1.0.1.exonerate LGELFDHGCDSISTALISFSCFSC-GAIDRPRTEVLCCCWHTYWCFTLMQISKRFTKILY
******** ** *:***.: ** *: * * .:: *:.: * * ::.* * :::
SPP00000088_1.0 LPWGYDFTMWGVSGMLFVATVFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNI
SPP00000088_1.0.1.exonerate ILWG--------------------------------------------------------
: **
SPP00000088_1.0 YLSYKNKTGKMRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
SPP00000088_1.0.1.exonerate ------------------------------------------------------------
SPP00000088_1.0 IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTERWILYGLTIF
SPP00000088_1.0.1.exonerate ------------------------------------------------------------
SPP00000088_1.0 STLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQLLQNNNKIKPLKSH
SPP00000088_1.0.1.exonerate -----------------------------------------------------H
*
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