SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR SELENOPROTEIN U (Sel U)
| DESCRIPCIÓN | Homólogo con cisteína. Z(-):44981578...44983202. |
| SELENOPROFILES | Elección: Exonerate. Elemento SECIS no predicho. |
| COMENTARIOS | Nosotros no hemos podido detectar este homólogo con cisteína pero Selenoprofiles sí. Probablemente se deba a que las selenoproteínas de Canis familiaris no estan introducidas en SelenoDB. |
RESULTADOS DEL Selenoprofiles
Output_id: SelU.5.cysteine
---------- ---------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (-) Z
-Program exonerate
-Query name gi|73946376|ref|XP_848380.1| PREDICTED: similar to UPF0308 protein C9orf21 [Canis familiaris]
-Query range 46-109 length:230 coverage: 0.28
-Profile range 259-340 length:585 coverage: 0.14 sec_position: [286]
-Average sequence identity with profile: 0.2322 (ignoring gaps: 0.2624)
-State kept
------- alignment -------
Query ASGRRVPFGALFRERRAVVVFVR <---Intron---> HFLUYICKEYVEDLAKIPKSVLQ <---Intron---> EADITLIVIGQSSYHHIE
|||/|||||/| //||||||| < 421bp > /|| | ||||||||||/|/| || < 1133bp > ||// ||||||||||||/
Target XDGRRIPFGALYRRQKAVVVFVR NFLCYTCKEYVEDLAKVPRSYLQ EANVRLIVIGQSSYHHIK
nggaaactggttaccaggggtgc attttatagtgggcgagcaattc ggagacagagctttccaa
nagggtctgctaggaactttttg attgacgaaataatcatcggata acatgttttgaccaaata
tcgggcctgcgcggggcctacag tcgtcctggtaacgaaccgtcaa aatgatattaggtttcag
*
------- positions -------
Exon 1 44983202 44983270
Exon 2 44982712 44982780
Exon 3 44981525 44981578
--------- SECIS ---------
None found
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
GTAAATAAGGTAGTCATTAAATAA
V N K V V I K *
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