SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR SECIS binding protein 2 (SBP2)
| DESCRIPCIÓN | Proteína de la maquinaria de traducción de las selenocisteínas. Z(+):46071064...46091619 |
| SECISearch | Sin resultados. |
| SELENOPROFILES | No encontrada. |
| COMENTARIOS | Elección: Genewise. Vemos un multiple-alignment mucho peor que el de la otra región predicha con homología con SBP2, que nos lleva a poner en duda que esta se trate de una SBP 2. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=67, Nseq=6, Len=1087
SPP00000037_1.0 MASEGPREPES-EGIKLSADVKPFVPRFAG--------------LNVAWLESSEACVFPS
SPP00000037_1.0.Z.exonerate QD-------HFHRMVQLTTEARKAYKEMVAALEEEAEGSQTETELSIITTEFEKSCLSET
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 MASERPREPDGEDSIKLSADVKPFVPKFAG--------------LNVAWSESSETRVFPG
SPP00000106_1.0.Z.exonerate LCGEGPGCPGGRQGIKLSAEVKPFVPKYAA--------------VTVAWSEPSAACVFPR
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 SAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYS
SPP00000037_1.0.Z.exonerate GKASPSDH------------DEDI--------PNYIKIWKKNLEEEYNPYALELEKTATA
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 CAATYYPFVQEPPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCS
SPP00000106_1.0.Z.exonerate YLTTGYTFVQEPQVYAEDLPRDDLS-SLSQCPSHSVVGDPALNEHSSSSCSPDVVSNTNP
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 VPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQE--------M-------------KALFK
SPP00000037_1.0.Z.exonerate LLFSQFSFFQNNLFKRCWSLCFRDFSLLPFLHQRSTGIQGIMRHLSLVPVIFCGCSRFFR
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 VPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQE--------A-------------KGVFK
SPP00000106_1.0.Z.exonerate VAASQYHSNGSTYCNDSRIVSESAEQKYPIRQE--------S-------------KSLLK
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 KKTYDEKKTYDQQKF-----------DSER-----------ADGTISSEIKSARGSHHLS
SPP00000037_1.0.Z.exonerate KQWYGTSKNHRFRT-LFLLCLLFLLQDCQHATIQLHRNLTLLTTALGCFLRMLR--SFLI
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 KKPSDERRACEEQKS-----------SSRR-----------ADNAVPCEARPARGSSHLS
SPP00000106_1.0.Z.exonerate DKYLQQRKAKDNEKKP----------DKKK-----------QDGEDSSVRIVKRAALQTS
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 IYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQG--------------
SPP00000037_1.0.Z.exonerate WQLLLIRETDDLRKQHLFCSRFIIRLLYISRLALLFLFLLFLLLFPFFKLSFTTIFFCFC
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 SRTESSLKSDGYHKRPDRKSRILAKSASTSKPEFEFSRLDFPELQS--------------
SPP00000106_1.0.Z.exonerate AGSEDSVKPDRFSKTASKKSTQAPKI--ESSPAFETTILDFHKLQS--------------
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 -------------AEN-NMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKN
SPP00000037_1.0.Z.exonerate LLTKILCLTILLPFVSGKTFRCWKGFLWGLKNRG--------------------------
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 -------------PKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSD
SPP00000106_1.0.Z.exonerate -------------LGSSEIL-------------------------------------NVH
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 NPNESVTANAATNSPS-CTRELSWTPMGYVVRQTLSTELSAAPKNV--------------
SPP00000037_1.0.Z.exonerate -PRHMWCLGA--------------------------------------------------
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 HTDGAVTSNATTSSPS-CTQELSWTPMGYIVRQTVSSDSAAATENV--------------
SPP00000106_1.0.Z.exonerate HKNKDVSVESKASSKTSKETVASLIPSSFDGRVTVGERGKL--RNASFSRSCSRTAERQE
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 --TSMINLKTIASSA-DPKNVSIP------SSEAL-------------SSDPSYNKEKHI
SPP00000037_1.0.Z.exonerate ------------------------------------------------------------
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 --TSMINLKKTTSSA-DAKNVSVT-------SEAL-------------SSNPSYNREKRV
SPP00000106_1.0.Z.exonerate RKGNPCRLRENKHSQKHAKTERLPPCLQTVMCSCIGSGCDLGXXXXXPQRKPFHHQHLNV
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 IHPTQKSKA-SQGSDLEQNEASRKNKKKKEKS----------TSKYEVLTVQEPPRIEDA
SPP00000037_1.0.Z.exonerate ------------------------------------------------------------
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 -YPAPKAKA-SQGGELEQNESSKKNKKKKEKS----------KPSYEVLTVQEPPRIEDA
SPP00000106_1.0.Z.exonerate -FPDTKAETKKYGSETELEEGSEKKKKKKKKKKKSKSPTNVEKPYNESTTVQKPPRIE--
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 EEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQ
SPP00000037_1.0.Z.exonerate --------------------------------------RGGSRFCLGMLLSLLYNRVQTE
SPP00000037_1.0.Z.genewise ---------------------------QETSKSSGKKSQIPVQLDLGGMLAVLEQKQQTE
SPP00000106_1.0 EEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKQQQQQ
SPP00000106_1.0.Z.exonerate -------VHGRKRYHSEGPQ-KTKYSLQETSKSSGKKSQIPVQLDLGGMLAVLEQKQQTE
SPP00000106_1.0.Z.genewise ---------------------------QETSKSSGKKSQIPVQLDLGGMLAVLEQKQQTE
: :: ** :*: * :: : :
SPP00000037_1.0 ---HAKQSSKPVVVSV-GAVPVLS-----------------------------------K
SPP00000037_1.0.Z.exonerate ---DST-CGKNVIRLHSYRLPIINMYYFLSLCVQQRRHLWLAKAYNVTFHTCWSIFMMHI
SPP00000037_1.0.Z.genewise ---KSKQCSKPVVFSVAGTIPLLS-----------------------------------K
SPP00000106_1.0 HASHAKPSSRPVVFSV-GAVPVLS-----------------------------------K
SPP00000106_1.0.Z.exonerate ---KSKQCSKPVVFSA-GTIPLLS-----------------------------------K
SPP00000106_1.0.Z.genewise ---KSKQCSKPVVFSVAGTIPLLS-----------------------------------K
.:. ..: *: :*::.
SPP00000037_1.0 ECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERK-QR
SPP00000037_1.0.Z.exonerate QYLTASQTLQLVEIQ------------------NSSFKCRR-------------------
SPP00000037_1.0.Z.genewise ESATATKNHRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKKVL-----------
SPP00000106_1.0 DASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERMQQR
SPP00000106_1.0.Z.exonerate ESATATKNHRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKKIILKERELRKQQH
SPP00000106_1.0.Z.genewise ESATATKNHRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKKVL-----------
: :. : : : : .. *.::
SPP00000037_1.0 LQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELIS-TPSVEDKSEEPPGTEL
SPP00000037_1.0.Z.exonerate ------------------------------------------------------------
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 LQESAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEF
SPP00000106_1.0.Z.exonerate LLEQTAVPKDGGNSCVSAENTTEDEALPQDSQAGMDVTEEPLE-----------------
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 QRDTEASHLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPV
SPP00000037_1.0.Z.exonerate ------------------------------------------------------------
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 QRDPEACQPAPDSATFPKIHSRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPV
SPP00000106_1.0.Z.exonerate ------------------------------------------------------------
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 KAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACEQ-NIP
SPP00000037_1.0.Z.exonerate ------RLY--------FWSLSLLACSFTEPV------------WLHGIFT-ACRGLCSP
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 KAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQ-NIP
SPP00000106_1.0.Z.exonerate ------------------------------------------------------------
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 F-----------------------------------------VFALNRKALGRSLNKAVP
SPP00000037_1.0.Z.exonerate FHNSDRRILSILLFLVWFLLIVLCFPLLQVFVLKTLTFLSDWILLFSRFTDYSGIITVCP
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 F-----------------------------------------VFALNRKALGRSLNKAVP
SPP00000106_1.0.Z.exonerate ------------------------------------------------------------
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 VSVV---------------GIFSYDGAQDQFHKMVELTVAARQAYKTMLENVQQELVGEP
SPP00000037_1.0.Z.exonerate IMILGSYWICINNIRARAAGVFICRISHNTMWTLRKREVIPRQIFSIYSLLIQRRFLNKC
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 VSIV---------------GIFSYDGAQDQFHKMVELTMAARQAYKTMLETMRQEQAGEP
SPP00000106_1.0.Z.exonerate ------------------------------------------------------------
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 RPQAPPSLPTQGPSCPAEDGP-PALKEKEEPHYIEIWKKHLEAYSGCTLELEESLEASTS
SPP00000037_1.0.Z.exonerate V---ACSVPRKDTCC----G-FPC-----HSYRCIFWNKWFD----------------LC
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000106_1.0 GPQSPPSPPMQDPIPSTEEGTLPS--TGEEPHYIEIWKKHLEAYSQRALELEDSLEASTS
SPP00000106_1.0.Z.exonerate -----------GN-----------------------------------------ASRSET
SPP00000106_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 QMMNLNL
SPP00000037_1.0.Z.exonerate QLDALTV
SPP00000037_1.0.Z.genewise ------M
SPP00000106_1.0 QMMNLNL
SPP00000106_1.0.Z.exonerate RTPTARE
SPP00000106_1.0.Z.genewise ------M
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=98, Nseq=2, Len=855
SPP00000037_1.0 MASEGPREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVT
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 EQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYR
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 GFQTVKHRNENTCPLPQEMKALFKKKTYDEKKTYDQQKFDSERADGTISSEIKSARGSHH
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 LSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQP
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 KWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPM
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 GYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHP
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 TQKSKASQGSDLEQNEASRKNKKKKEKSTSKYEVLTVQEPPRIEDAEEFPNLAVASERRD
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 RIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQSSKPVVVSV-
SPP00000037_1.0.Z.genewise -------------QETSKSSGKKSQIPVQLDLGGMLAVLEQKQQTEKSKQCSKPVVFSVA
*:. *.. ****:**********:.**:**:::::**.*****.**
SPP00000037_1.0 GAVPVLSKECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKE
SPP00000037_1.0.Z.genewise GTIPLLSKESATATKNHRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKKVL---
*::*:****.*:. :.:*:.* * ***********:*******:****:**.***::
SPP00000037_1.0 RQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEE
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 PPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRM
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 YQKDPVKAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYAC
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLEN
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 VQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEIWKKHLEAYSGCTLELE
SPP00000037_1.0.Z.genewise ------------------------------------------------------------
SPP00000037_1.0 ESLEASTSQMMNLNL
SPP00000037_1.0.Z.genewise --------------M
:
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