SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Glutathione peroxidase 3 (GPx 3)
| DESCRIPCIÓN | Selenoproteína. Región: 15(-):12636915...12635979 |
| SECISearch | Elemento predicho en la cadena complementaria. 15:subseq(12626915,10000):[9019,8919] [8919 - 9019] |
| SELENOPROFILES | Encontrada. Elección: Exonerate. Predicción elemento SECIS (strand:- positions:12635834-12635934) |
| COMENTARIOS | Elección: El alineamiento de las predicciones de Exonerate y Genewise obtuvieron el mismo score pero por defecto reportamos el alineamiento de genewise. Presencia de tres homólogos con cisteína, SPP00000010 que es de Homo sapiens, SPP00000069, que es de Pan troglodytes (chimpancé), y SPP00000103 de Mus musculus (ratón). Claramente Meleagris gallopavo presenta selenocisteína. Basándonos en el SCORE de t_coffee predecimos que se trata de la GPx 3, aunque no podemos afirmarlo. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
3. RESULTADOS DEL SECISearch
4. RESULTADOS DEL Selenoprofiles
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=66, Nseq=51, Len=248
SPP00000103_1.0 MAQ----------------KLWGSCLFSLFMAALAQETLNPQKSKVDCNKGVTGTVYEYG
SPP00000103_1.0.15.exonerate -------------------------------------SLNPLLAKVKCYDSVRGTIYDYG
SPP00000103_1.0.15.genewise ---------------------------------------------VKCYDSVRGTIYDYG
SPP00000098_1.0 MCA----------------AR--------------------------LSAAAQSTVYAFS
SPP00000098_1.0.15.exonerate --------------------------------------------------SVRGTIYDYG
SPP00000098_1.0.15.genewise ------------------------------------------------------------
SPP00000006_1.0 MAR----------------LLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYG
SPP00000006_1.0.15.exonerate LLP-------------------VPAVLSHLLLHFLDQSTGHTLSQVKCYDSVRGTIYDYG
SPP00000006_1.0.15.genewise -----------------------------------------------CYDSVRGTIYDYG
SPP00000067_1.0 MAR----------------LLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYG
SPP00000067_1.0.15.exonerate LLP-------------------VPAVLSHLLLHFLDQSTGHTLSQVKCYDSVRGTIYDYG
SPP00000067_1.0.15.genewise -----------------------------------------------CYDSVRGTIYDYG
SPP00000100_1.0 MAR----------------ILRASCLLSLLLAGFVPPGRGQEKSKTDCHGGMSGTIYEYG
SPP00000100_1.0.15.exonerate ----------------------------------------QSFSKVKCYDSVRGTIYDYG
SPP00000100_1.0.15.genewise -----------------------------------------------CYDSVRGTIYDYG
SPP00000004_1.0 MCA----------------AR------------------------LAAAAAAAQSVYAFS
SPP00000004_1.0.15.exonerate ------------------------------------------------------TIYDYG
SPP00000004_1.0.15.genewise ------------------------------------------------------------
SPP00000008_1.0 MTT----------------QLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYE
SPP00000008_1.0.15.exonerate LYI--------------------AQVLPAALHCCIQLPPKQACFRVKCYDSVRGTIYDYG
SPP00000008_1.0.15.genewise -----------------------------------------------CYDSVRGTIYDYG
SPP00000009_1.0 MFQ----------------QFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYG
SPP00000009_1.0.15.exonerate MGE---------------------------------QFFPKTNQKVKCYDSVRGTIYDYG
SPP00000009_1.0.15.genewise ---------------------------------------------VKCYDSVRGTIYDYG
SPP00000065_1.0 MCA----------------AR--------------------------LAAAAAQSVYAFS
SPP00000065_1.0.15.exonerate ------------------------------------------------------TIYDYG
SPP00000065_1.0.15.genewise ------------------------------------------------------------
SPP00000069_1.0 MTT----------------QLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYE
SPP00000069_1.0.15.exonerate LYI--------------------AQVLPAALHCCIQLPPKQACFRVKCYDSVRGTIYDYG
SPP00000069_1.0.15.genewise -----------------------------------------------CYDSVRGTIYDYG
SPP00000070_1.0 MFR----------------QFQASCLVLLFLVGFAQQILKPQNRKVDCNKGVTGTIYEYG
SPP00000070_1.0.15.exonerate MGE---------------------------------QFFPKTNQKVKCYDSVRGTIYDYG
SPP00000070_1.0.15.genewise ---------------------------------------------VKCYDSVRGTIYDYG
SPP00000102_1.0 MSKDCRPSDQKSAVLVMVTELRVFYLVPLLLASYVQTTPRPEKMKMDCYKDVKGTIYDYE
SPP00000102_1.0.15.exonerate --------------------------------SYLRYPHRKQKTKVKCYDSVRGTIYDYG
SPP00000102_1.0.15.genewise -----------------------------------------------CYDSVRGTIYDYG
SPP00000005_1.0 M------------------------------------------------AFIAKSFYDLS
SPP00000005_1.0.15.exonerate ---------------------------------------------------VRGTIYDYG
SPP00000005_1.0.15.genewise ------------------------------------------------------------
SPP00000066_1.0 M------------------------------------------------AFIAKSFYDLS
SPP00000066_1.0.15.exonerate ---------------------------------------------------VRGTIYDYG
SPP00000066_1.0.15.genewise ------------------------------------------------------------
SPP00000099_1.0 M------------------------------------------------AYIAKSFYDLS
SPP00000099_1.0.15.exonerate ---------------------------------------------------VRGTIYDYG
SPP00000099_1.0.15.genewise ------------------------------------------------------------
SPP00000010_1.0 MVA----------------ATVAAAWLLLWAAA--------------CA-QQEQDFYDFK
SPP00000010_1.0.15.exonerate -------------------------------------------------------IYDYG
SPP00000010_1.0.15.genewise ------------------------------------------------------------
SPP00000071_1.0 MVA----------------ATVAAAWLLLWAAA--------------CA-QQEQDFYDFK
SPP00000071_1.0.15.exonerate -------------------------------------------------------IYDYG
SPP00000071_1.0.15.genewise ------------------------------------------------------------
SPP00000103_1.0 ANTIDGGEFVNFQQYAGKHILFVNVASFCGLTA-TYPELNTLQEELKPFNVTVLGFPCNQ
SPP00000103_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000103_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000098_1.0 ARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQ
SPP00000098_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000098_1.0.15.genewise -------------------------------------ELNALQNELGPYGLVVLGFPSNQ
SPP00000006_1.0 ALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQ
SPP00000006_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000006_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000067_1.0 ALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQ
SPP00000067_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000067_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000100_1.0 ALTIDGEEYIPFKQYAGKYILFVNVASY-G--D-QYLELNALQEELGPFGLVILGFPSNQ
SPP00000100_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000100_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000004_1.0 ARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ
SPP00000004_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000004_1.0.15.genewise -------------------------------------ELNALQNELGPYGLVVLGFPSNQ
SPP00000008_1.0 AIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQ
SPP00000008_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000008_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000009_1.0 ALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAA-QYPELNALQEELKNFGVIVLAFPCNQ
SPP00000009_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000009_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000065_1.0 ARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ
SPP00000065_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000065_1.0.15.genewise -------------------------------------ELNALQNELGPYGLVVLGFPSNQ
SPP00000069_1.0 AIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNAP-EELKPYGLVVLGFPCNQ
SPP00000069_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000069_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000070_1.0 ALTLNGEEYIQFKQFAGKHVLFVNVATYUGLAA-QYPELNALQEELKNFGVIVLAFPCNQ
SPP00000070_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000070_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000102_1.0 ALSLNGKEHIPFKQYAGKHVLFVNVATYCGLTI-QYPELNALQEDLKPFGLVILGFPCNQ
SPP00000102_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000102_1.0.15.genewise ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000005_1.0 AISLDGE-KVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQ
SPP00000005_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000005_1.0.15.genewise -------------------------------------ELNALQNELGPYGLVVLGFPSNQ
SPP00000066_1.0 AISLDGE-KVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQ
SPP00000066_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000066_1.0.15.genewise -------------------------------------ELNALQNELGPYGLVVLGFPSNQ
SPP00000099_1.0 AVGLDGE-KIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRF-PRRLVVLGFPCNQ
SPP00000099_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000099_1.0.15.genewise -------------------------------------ELNALQNELGPYGLVVLGFPSNQ
SPP00000010_1.0 AVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQ
SPP00000010_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000010_1.0.15.genewise --------------------------------------LNALQNELGPYGLVVLGFPSNQ
SPP00000071_1.0 AVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQ
SPP00000071_1.0.15.exonerate ALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTL-QYLELNALQNELGPYGLVVLGFPSNQ
SPP00000071_1.0.15.genewise --------------------------------------LNALQNELGPYGLVVLGFPSNQ
:: : . :*.**.**
SPP00000103_1.0 FGKQEPGKNSEILLGLKYVRPG-GGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSEL
SPP00000103_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000103_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000098_1.0 FGHQENGKNEEILNSLKYVRPG-GGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDD
SPP00000098_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000098_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000006_1.0 FGKQEPGENSEILPTLKYVRPG-GGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSEL
SPP00000006_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000006_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000067_1.0 FGKQEPGENSEILPTLKYVRPG-GGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSEL
SPP00000067_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000067_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000100_1.0 FGKQEPGENSEILPSLKYVRPG-GGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAEL
SPP00000100_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000100_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000004_1.0 FGHQENAKNEEILNSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDD
SPP00000004_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000004_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000008_1.0 FGKQEPGDNKEILPGLKYVRPG-GGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEI
SPP00000008_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000008_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000009_1.0 FGKQEPGTNSEILLGLKYVCPG-SGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDL
SPP00000009_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000009_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000065_1.0 FGHQENAKNEEILNSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDD
SPP00000065_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000065_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000069_1.0 FGKQEPGDNKEILPALKYVRPG-GGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEI
SPP00000069_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000069_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000070_1.0 FGKQEPGTNSEILLGLKYVCPG-SGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDL
SPP00000070_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000070_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000102_1.0 FGKQEPGDNLEILPGLKYVRPG-KGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSET
SPP00000102_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000102_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000005_1.0 FGHQENCQNEEILNSLKYVRPG-GGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDD
SPP00000005_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000005_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000066_1.0 FGHQENCQNEEILNSLKYVRPG-GGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPYPYDD
SPP00000066_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000066_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000099_1.0 FGHQENCQNEEILNSLKYVRPG-GGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDD
SPP00000099_1.0.15.exonerate FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000099_1.0.15.genewise FGKQEPGQNSEILPALKYVRPG-GGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEE
SPP00000010_1.0 FGQQEPDSNKEIESFARR------TYSVSFPMFSKIAVTGTGAHPAFKYLAQTS------
SPP00000010_1.0.15.exonerate FGKQEPGQNSEILPALNALV------SHSFQLFQKGDVNGAKEQKVYSFLK---------
SPP00000010_1.0.15.genewise FGKQEPGQNSE-------------------------------------------------
SPP00000071_1.0 FGQQEPDSNKEIESFARR------TYSVSFPMFSKIAVTGTGAHPAFKYLA---------
SPP00000071_1.0.15.exonerate FGKQEPGQNSEILPALKVLGMRKVGYG---------------------------------
SPP00000071_1.0.15.genewise FGKQEPGQNSEI------------------------------------------------
**:** * *
SPP00000103_1.0 ----FGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQT
SPP00000103_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQQ
SPP00000103_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000098_1.0 PTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIETLLSQQ
SPP00000098_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQQ
SPP00000098_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQQ
SPP00000006_1.0 ----LGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ
SPP00000006_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ-
SPP00000006_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ-
SPP00000067_1.0 ----LGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ
SPP00000067_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ-
SPP00000067_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ-
SPP00000100_1.0 ----LGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYMRRQ
SPP00000100_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ-
SPP00000100_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ-
SPP00000004_1.0 ATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQG
SPP00000004_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000004_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000008_1.0 ----LGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQF
SPP00000008_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000008_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000009_1.0 ----LGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQF
SPP00000009_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000009_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000065_1.0 ATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQG
SPP00000065_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000065_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000069_1.0 ----LGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQF
SPP00000069_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000069_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000070_1.0 ----LGSSSQLFWEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDILEYLKQF
SPP00000070_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000070_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000102_1.0 ----VVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMAYLSHF
SPP00000102_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAY----
SPP00000102_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAY----
SPP00000005_1.0 PFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKV-
SPP00000005_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKND--------
SPP00000005_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDI-------
SPP00000066_1.0 PFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKV-
SPP00000066_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKND--------
SPP00000066_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDI-------
SPP00000099_1.0 PFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRLLKV-
SPP00000099_1.0.15.exonerate ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKND--------
SPP00000099_1.0.15.genewise ----FGNPKNLFWEPLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDI-------
SPP00000010_1.0 -----------------GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKL
SPP00000010_1.0.15.exonerate --------------PLRNHDIKWNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMR--
SPP00000010_1.0.15.genewise ------------------------------------------------------------
SPP00000071_1.0 ------------------------------------------------------------
SPP00000071_1.0.15.exonerate ----------------------------------KAAATWECSS----------------
SPP00000071_1.0.15.genewise ------------------------------------------------------------
SPP00000103_1.0 -----STQ
SPP00000103_1.0.15.exonerate -----RGQ
SPP00000103_1.0.15.genewise -------Q
SPP00000098_1.0 S----GNS
SPP00000098_1.0.15.exonerate ------RG
SPP00000098_1.0.15.genewise ------RG
SPP00000006_1.0 AALGVKRK
SPP00000006_1.0.15.exonerate -------Q
SPP00000006_1.0.15.genewise -------Q
SPP00000067_1.0 AALGVKRK
SPP00000067_1.0.15.exonerate -------Q
SPP00000067_1.0.15.genewise -------Q
SPP00000100_1.0 AALSARGK
SPP00000100_1.0.15.exonerate -------Q
SPP00000100_1.0.15.genewise -------Q
SPP00000004_1.0 P----SCA
SPP00000004_1.0.15.exonerate -------Q
SPP00000004_1.0.15.genewise -------Q
SPP00000008_1.0 -----KTK
SPP00000008_1.0.15.exonerate -------Q
SPP00000008_1.0.15.genewise -------Q
SPP00000009_1.0 -----NTH
SPP00000009_1.0.15.exonerate -------Q
SPP00000009_1.0.15.genewise -------Q
SPP00000065_1.0 P----SCA
SPP00000065_1.0.15.exonerate -------Q
SPP00000065_1.0.15.genewise -------Q
SPP00000069_1.0 -----KTK
SPP00000069_1.0.15.exonerate -------Q
SPP00000069_1.0.15.genewise -------Q
SPP00000070_1.0 -----NTH
SPP00000070_1.0.15.exonerate -------Q
SPP00000070_1.0.15.genewise -------Q
SPP00000102_1.0 -----KTI
SPP00000102_1.0.15.exonerate -------M
SPP00000102_1.0.15.genewise -------M
SPP00000005_1.0 ------AI
SPP00000005_1.0.15.exonerate -------I
SPP00000005_1.0.15.genewise --------
SPP00000066_1.0 ------AI
SPP00000066_1.0.15.exonerate -------I
SPP00000066_1.0.15.genewise --------
SPP00000099_1.0 ------AI
SPP00000099_1.0.15.exonerate -------I
SPP00000099_1.0.15.genewise --------
SPP00000010_1.0 ILLKREDL
SPP00000010_1.0.15.exonerate -------Q
SPP00000010_1.0.15.genewise -------I
SPP00000071_1.0 -------R
SPP00000071_1.0.15.exonerate ------PA
SPP00000071_1.0.15.genewise --------
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=99, Nseq=2, Len=226
SPP00000006_1.0 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA
SPP00000006_1.0.15.genewise -------------------------------CYDSVRGTIYDYGALTIDGDEYIPFRKYA
*:..: ****:********:*****::**
SPP00000006_1.0 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK
SPP00000006_1.0.15.genewise GKMVLFVNVATYUGLTLQYLELNALQNELGPYGLVVLGFPSNQFGKQEPGQNSEILPALK
** *******:* *** **:******:**.*:***:****.*********:******:**
SPP00000006_1.0 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR
SPP00000006_1.0.15.genewise YVRPGGGFVPNFQLFQKGDVNGAKEQKVYSFLKNSCPPVAEEFGNPKNLFWEPLRNHDIK
***************:****** ****.*:********.:* :*....*****:: ***:
SPP00000006_1.0 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK
SPP00000006_1.0.15.genewise WNFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQ--------Q
*********.**:*****:**:.::.** **::***: :
......................................................................................................................................................................................................................................................
RESULTADOS DEL SECISearch
>15:subseq(12626915,10000):[9019,8919] [8919 - 9019] (SECIS on complementary strand) - Free Energy: -33.03 CGGCCCUGGGGAACUGAGGACGACAUCUCCAUGAAGGCCUGGCCUGAAAGCUCCACCGUGGGGUGGGCUCGGCCUGAUCCUGCCCGGGUGCAGUGCAGUUC
_[9019,8919].png)
......................................................................................................................................................................................................................................................
RESULTADOS DEL Selenoprofiles
Output_id: GPx.5.selenocysteine
---------- --------------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (-) 15
-Program exonerate
-Query name gi|212549567|ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]
-Query range 30-221 length:221 coverage: 0.87
-Profile range 107-447 length:447 coverage: 0.76 sec_position: [193]
-Average sequence identity with profile: 0.3839 (ignoring gaps: 0.4415)
-State kept
------- alignment -------
Query MDCYKGVTGTIYEYGALTLNGEEYIPFKQYAGKHVLFVNVATYUGLTAQYPE <---Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAKNS
/ || | ||||/|||||//|/|||||//|||| ||||||||||||| || | < 95bp > ||||| || |/|/|||||| |||||||| /||
Target VKCYDSVRGTIYDYGALTIDGDEYIPFRKYAGKMVLFVNVATYUGLTLQYLE LNALQNELGPYGLVVLGFPSNQFGKQEPGQNS
gattgtgcgaatgtggcaaggggtactcatggaagctgaggattgcacctcg cagccagcgctgcggcgtctactgacgcgcat
tagaactggctaaagctctagaaatctgaacgatttttatccaggtctaat atactaaatgcagttttgtccaatgaaacgaac
gaccccggccctccgggcctgcgccccagcgggggctccgcgcagccggcc agtaaatgggctatccgcccccatggggtcgct
*
Query EILLGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLK <---Intron---> NSCPPTSDLLGSSNQLFWEPMKVHDIRW
||| || < 200bp > |||||||||||||||/|||||| |||||//||| < 81bp > ||||| // |/ |||||// |||/|
Target EILPALK YVRPGGGFVPNFQLFQKGDVNGAKEQKVYSFLK NSCPPVAEEFGNPKNLFWEPLRNHDIKW
gaccgca tgccgggtgcatcctcagggaggagcagtatca attccggggtgacaacttgccaacgaat
attccta atgcgggttcatattaagatagcaaaatagtta acgcctcaatgacaattgactgaaatag
gcccag gcggaatccccccaccgagtgcgaggggccccgg ccctggaggccccgcccggaggccccag
Query NFEKFLVGPDGVPVMRWYHRASVSTVKSDIMEYLKQFKSE
|||||||| ||||/|||||||///|||/||/ |//| / /
Target NFEKFLVGTDGVPIMRWYHRANIATVKNDIIAYMRQQRGQ
atgatcggagggcaacttccgaagagaagaagtaccccgc
ataatttgcagtcttggaagcatcctaaattcatgaagga
ctggcggctcggccgcgcctccccccgccccccgggggcg
------- positions -------
Exon 1 12636768 12636921
Exon 2 12636555 12636672
Exon 3 12636255 12636354
Exon 4 12635970 12636173
--------- SECIS ---------
>GPx.5.selenocysteine.esecis:str.1 chromosome:15 strand:- positions:12635834-12635934 species:"Meleagris gallopavo"
target:/homes/users/U63748/gallopavo.fa distance_from_sec_uga:479 distance_from_cds:35
CGGCCCUGGG GAACUGAG GACGACAUCUCC AUGAA GGCCUGGCCUG AA AGCUCCACCGUGGGG UGGGCUCGGCC UGAU CCUGC CCGGGUGC AGUGCAGUUC
..(((((((( .....(.( ((.......))) .(((( ((((.(((((. .. .((((((...))))) )))))).)))) )))) .)..) ))))).)) ..........
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
TAG
*
......................................................................................................................................................................................................................................................