SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Eukaryotic elongation factor (eEFSec)
| DESCRIPCIÓN | Proteína de la maquinaria de la síntesis de selenoproteínas. 14(-):9947409...9859308. |
| SECISearch | Sin resultados. |
| SELENOPROFILES | No encontrada. |
| COMENTARIOS | Elección: El alineamiento de las predicciones de Exonerate y Genewise obtuvieron el mismo score pero por defecto reportamos el alineamiento de Genewise. Se trata de un gen sin selenocisteína, se trata de un factor de elongación de la traducción específico de selenocisteína, que ayuda a la síntesis de la selenoproteína. En el best pairwise-alignment vemos que presenta una deleción al inicio de la secuencia. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=90, Nseq=9, Len=630
SPP00000038_1.0 MAGR------RVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRE----RGITLD
SPP00000038_1.0.14.exonerate ------------------------------------------------------------
SPP00000038_1.0.14.genewise ------------------------------------------------------------
SPP00000085_1.0 MTSPPSTSSSVGPLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD
SPP00000085_1.0.14.exonerate ------------------------------------------------------------
SPP00000085_1.0.14.genewise ------------------------------------------------------------
SPP00000092_1.0 MP---------INFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVE----RGITLD
SPP00000092_1.0.14.exonerate ------------------------------------------------------------
SPP00000092_1.0.14.genewise ------------------------------------------------------------
SPP00000038_1.0 LGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQII
SPP00000038_1.0.14.exonerate ----------------------------------LLFISIFTCAIHYWAFLIIRGGAQII
SPP00000038_1.0.14.genewise -------------------------------------------------------GAQII
SPP00000085_1.0 LGFSTMTSLSG------------------------RRLALIDCPGHSGLIRAVLAASTVF
SPP00000085_1.0.14.exonerate --------------------------------------ASVSSPEQLGLCLSASAGAQII
SPP00000085_1.0.14.genewise ----------------------------------------------------------II
SPP00000092_1.0 LGFSGLLVDAPAHLP---------------QG-EQLQFTFVDCPGHASLIRTIIGGAQII
SPP00000092_1.0.14.exonerate ----------------------------------Y---LFIYCPFLSFQIITIVLGAQII
SPP00000092_1.0.14.genewise -------------------------------------------------------GAQII
::
SPP00000038_1.0 DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKLVVVLNKIDLLPEGKRQAAIDKMTKKMQK
SPP00000038_1.0.14.exonerate DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKMVVVLNKIDLLPEAKRQSAIEKMTKKMQK
SPP00000038_1.0.14.genewise DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKMVVVLNKIDLLPEAKRQSAIEKMTKKMQK
SPP00000085_1.0 DMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCDLAEKSKIS----ESAKKVRK
SPP00000085_1.0.14.exonerate DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKMVVVLNKIDLLPEAKRQSAIEKMTKKMQK
SPP00000085_1.0.14.genewise DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKMVVVLNKIDLLPEAKRQSAIEKMTKKMQK
SPP00000092_1.0 DLMLLVVDAQKGKQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAK
SPP00000092_1.0.14.exonerate DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKMVVVLNKIDLLPEAKRQSAIEKMTKKMQK
SPP00000092_1.0.14.genewise DLMMLVIDVTKGMQTQSAECLVIGQIAC-QKMVVVLNKIDLLPEAKRQSAIEKMTKKMQK
*: ::::*. * *.*:** *::.. :::::*:** *: : : : :: *
SPP00000038_1.0 TLENTKFRG----------APIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRD
SPP00000038_1.0.14.exonerate TLENTKFSG----------CPIVAVAAKPGGPEAPESENPLGVSELIEVLKSQAYLPSRD
SPP00000038_1.0.14.genewise TLENTKFSG----------CPIVAVAAKPGGPEAPESENPLGVSELIEVLKSQAYLPSRD
SPP00000085_1.0 GLKSMGVDEN---------SPIVEMSLADGYFK------EEMLQNLKLAIESRIFEPKRD
SPP00000085_1.0.14.exonerate TLENTKSAT----------VEMAVMAFYPGMV---------LLLSFIQVLKSQAYLPSRD
SPP00000085_1.0.14.genewise TLENTNCKPVQSIIRLPSFCCMAVMAFYPGMV---------LLLSFIQVLKSQAYLPSRD
SPP00000092_1.0 TLEATTFGGQ---------VPICAVSALQGT----------HIAELREVLREAYFQPQRN
SPP00000092_1.0.14.exonerate TLENTKFSG----------CPIVAVAAKPGMV---------LLLSFIQVLKSQAYLPSRD
SPP00000092_1.0.14.genewise TLENTKFSG----------CPIVAVAAKPGMV---------LLLSFIQVLKSQAYLPSRD
*: : :: * : .: : . * *:
SPP00000038_1.0 PSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITS
SPP00000038_1.0.14.exonerate PSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTY
SPP00000038_1.0.14.genewise PSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTY
SPP00000085_1.0 EEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQ
SPP00000085_1.0.14.exonerate PSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTY
SPP00000085_1.0.14.genewise PSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTY
SPP00000092_1.0 LADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTS
SPP00000092_1.0.14.exonerate PSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTY
SPP00000092_1.0.14.genewise PSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTY
. ::: :****.******* ***:: * : :. :*:*** ::**::: :: :
SPP00000038_1.0 AMQGDRLGICV-TQFDPKLLERGLVCAP-ESLHTVHAALISVEKIPYFRGPLQTKAKFHI
SPP00000038_1.0.14.exonerate AMQGDRVGICV-TQFDPKLLERGLICTP-ESLHTIHAAIISLKKIQYFRGALQTKAKFHI
SPP00000038_1.0.14.genewise AMQGDRVGICV-TQFDPKLLERGLICTP-ESLHTIHAAIISLKKIQYFRGALQTKAKFHI
SPP00000085_1.0 VAAGARAAFLVAPSFDEHRFSRC-ICGPLGTLKSTKFVLATVEPIQFFRKSINSKSKIHV
SPP00000085_1.0.14.exonerate AMQGDRVGICV-TQFDPKLLERGLICTP-ESLHTIHAAIISLKKIQYFRGALQTKAKFHI
SPP00000085_1.0.14.genewise AMQGDRVGICV-TQFDPKLLERGLICTP-ESLHTIHAAIISLKKIQYFRGALQTKAKFHI
SPP00000092_1.0 ASMGDRIGLCV-TQFNAKLLERGIITQP-GYLKPIYAVCLQFKPIRYYKEVIKSMRKMHI
SPP00000092_1.0.14.exonerate AMQGDRVGICV-TQFDPKLLERGLICTP-ESLHTIHAAIISLKKIQYFRGALQTKAKFHI
SPP00000092_1.0.14.genewise AMQGDRVGICV-TQFDPKLLERGLICTP-ESLHTIHAAIISLKKIQYFRGALQTKAKFHI
. * * .: * ..*: : :.* : * *:. . .: * ::: ::: *:*:
SPP00000038_1.0 TVGHETVMGRLMFF-SPAPDNFDQEPIL-D----SFNFSQEYLFQEQYLSKDLTPAVTDN
SPP00000038_1.0.14.exonerate TVGHETVMGRVMFF-SPAPADFNEEIQE-N----AFDFDKDYLYQEEYLSNDSKPS----
SPP00000038_1.0.14.genewise TVGHETVMGRVMFF-SPAPADFNEEIQE-N----AFDFDKDYLYQEEYLSNDSKPS----
SPP00000085_1.0 AVAFETVMAECQFL-KE-------------------------------------------
SPP00000085_1.0.14.exonerate TVGHETVMGRAQLLLRVSTADFRGHSSQMNEKTSLSKFQNHFFLDANLVTR---------
SPP00000085_1.0.14.genewise TVGHETVMGRVMFF-KE-------------------------------------------
SPP00000092_1.0 SVGHNTVMANVTLF-RDTDG------TT-S----TFQLDKEYEYMEDV------------
SPP00000092_1.0.14.exonerate TVGHETVMGRVMFF-SPAPADFNEEIQE-N----AFDFDKDYLYQ---------------
SPP00000092_1.0.14.genewise TVGHETVMGRVMFF-SPAPADFNEEIQE-N----AFDFDKDYLYQEEYLSNDSKPS----
:*..:***.. ::
SPP00000038_1.0 DEADKKAGQATEG--HCPRQQWALVEFEKPVTCPRLC--LVIGSRLDADIHTNTCRLAFH
SPP00000038_1.0.14.exonerate -EENKENGQ-SEV--QLPKQQWALLEFEKPVTCPELC--LVIGSKLDTDIHANTCRLAFH
SPP00000038_1.0.14.genewise -EENKENGQ-SEV--QLPKQQWALLEFEKPVTCPELC--LVIGSKLDTDIHANTCRLAFH
SPP00000085_1.0 ----KENGE-FEMLPSLLAPCQVLFSFEKSIFLPENYSNPFMAARLEQQP-GSGCRFAFS
SPP00000085_1.0.14.exonerate -----------KV--ASRGEQWEQLGG----------------------------TATFF
SPP00000085_1.0.14.genewise ---NKENGQ-SEV--QLPKQQWALLEFEKPVTCPELC--LVIGSKLDTDIHANTCRLAFH
SPP00000092_1.0 -------QP-AEV--QHNDVIYALLQFESPVLSPPHS--TLIASKLDMDVHSTSCRLAFW
SPP00000092_1.0.14.exonerate -----------EV--QLPKQQWALLEFEKPVTCPELC--LVIGSKLDTDIHANTCRLAFH
SPP00000092_1.0.14.genewise -EENKENGQ-SEV--QLPKQQWALLEFEKPVTCPELC--LVIGSKLDTDIHANTCRLAFH
: . :*
SPP00000038_1.0 GILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERAM-DDYSVIGRSLFKKETNIQLFVGL
SPP00000038_1.0.14.exonerate GVLLQGTEDKNYAETFLPKLKVYKQKHKEGQVERVI-DDYSVIGRSLFKKETNIQIFVGL
SPP00000038_1.0.14.genewise GVLLQGTEDKNYAETFLPKLKVYKQKHKEGQVERVI-DDYSVIGRSLFKKETNIQIFVGL
SPP00000085_1.0 GIFSQILPEN--GKNLPPR---FTRKCRKGHVERVEKDGFSAICTGMFKAETNFDVFRGF
SPP00000085_1.0.14.exonerate STQSHLI--ENLNQLGPPCCRITR---AVSENTVVI-DDYSVIGRSLFKKETNIQIFVGL
SPP00000085_1.0.14.genewise GVLLQGTEDKNYAETFLPKLKVYKQKHKEGQVERVI-DDYSVIGRSLFKKETNIQIFVGL
SPP00000092_1.0 GRIAWQTHSSKYFQEELPKLRIFKRKQKVGSIQRVV-NSSEVIVQNLFKD-AKRDLYVGK
SPP00000092_1.0.14.exonerate GVLLQGTEDKNYAETFLPKLKVYKQKHKEGQVERVI-DDYSVIGRSLFKKETNIQIFVGL
SPP00000092_1.0.14.genewise GVLLQGTEDKNYAETFLPKLKVYKQKHKEGQVERVI-DDYSVIGRSLFKKETNIQIFVGL
. . * . . :. ..* .:** :: ::: *
SPP00000038_1.0 KVHLSTGELGIIDSAFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGRGEATRQEESA
SPP00000038_1.0.14.exonerate KVKLSTGEEGIIDGGFGQSGKFKIRIPGGLKPETKMLLSAASKKKSKAGKGDANKEDESS
SPP00000038_1.0.14.genewise KVKLSTGEEGIIDGGFGQSGKFKIRIPGGLKPETKMLLSAASKKKSKAGKGDANKEDESS
SPP00000085_1.0 QICTSSGPRGKIEGAFGKSGKFRVTFAEKIDGILT-------------------------
SPP00000085_1.0.14.exonerate KVKLSTGEEGIIDGGFGQSGKFKIRIPEKT------------------------------
SPP00000085_1.0.14.genewise KVKLSTGEEGIIDGGFGQSGKFK-------------------------------------
SPP00000092_1.0 NVELSTGEKGRIERTFGQTSKVAITFQDALSPETIS------------------------
SPP00000092_1.0.14.exonerate KVKLSTGEEGIIDGGFGQSGKFKIRIPGSLSSPTLN------------------------
SPP00000092_1.0.14.genewise KVKLSTGEEGIIDGGFGQSGKFK-------------------------------------
:: *:* * *: **::.*.
SPP00000038_1.0 ERSEPSQHVVLSLTFKRYVFDTHKRMVQSP
SPP00000038_1.0.14.exonerate -KNDSAQPVTITLLFKRYVFDTQKKMI-QS
SPP00000038_1.0.14.genewise -KNDSAQPVTITLLFKRYVFDTQKKMI-QS
SPP00000085_1.0 ------EKEEISLFLKKYHNENRLVSYVPD
SPP00000085_1.0.14.exonerate -------------------------DF-FL
SPP00000085_1.0.14.genewise -----------------------------I
SPP00000092_1.0 ----NVKNVKVLLNCKKYVFNKQAG-L-FQ
SPP00000092_1.0.14.exonerate ----------------------KQNLK-SL
SPP00000092_1.0.14.genewise -----------------------------I
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=98, Nseq=2, Len=596
SPP00000038_1.0 MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPL
SPP00000038_1.0.14.genewise ------------------------------------------------------------
SPP00000038_1.0 PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVT
SPP00000038_1.0.14.genewise ---------------------------------------------GAQIIDLMMLVIDVT
***************
SPP00000038_1.0 KGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAP
SPP00000038_1.0.14.genewise KGMQTQSAECLVIGQIACQKMVVVLNKIDLLPEAKRQSAIEKMTKKMQKTLENTKFSGCP
********************:************.***:**:*************** *.*
SPP00000038_1.0 IIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTV
SPP00000038_1.0.14.genewise IVAVAAKPGGPEAPESENPLGVSELIEVLKSQAYLPSRDPSGHFLMAVDHCFSIKGQGTV
*:.************:* * *:.****:*.** :*:***** ***:*************
SPP00000038_1.0 MTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLER
SPP00000038_1.0.14.genewise MTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTYAMQGDRVGICVTQFDPKLLER
*********:****.********.********** *:* ******:**************
SPP00000038_1.0 GLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQ
SPP00000038_1.0.14.genewise GLICTPESLHTIHAAIISLKKIQYFRGALQTKAKFHITVGHETVMGRVMFFSPAPADFNE
**:*:******:***:**::** ****.*******************:******* :*::
SPP00000038_1.0 EPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPV
SPP00000038_1.0.14.genewise EIQENAFDFDKDYLYQEEYLSNDSKPS-----EENKENGQ-SEVQLPKQQWALLEFEKPV
* ::*:*.::**:**:***:* .*: * :*: ** :* : *:*****:******
SPP00000038_1.0 TCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVE
SPP00000038_1.0.14.genewise TCPELCLVIGSKLDTDIHANTCRLAFHGVLLQGTEDKNYAETFLPKLKVYKQKHKEGQVE
***.*******:**:***:*********:**:* **:***::***:***** ***.* **
SPP00000038_1.0 RAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGLSPES
SPP00000038_1.0.14.genewise RVIDDYSVIGRSLFKKETNIQIFVGLKVKLSTGEEGIIDGGFGQSGKFKIRIPGGLKPET
*.:******************:******:***** ****..*********:*****.**:
SPP00000038_1.0 KKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQSP
SPP00000038_1.0.14.genewise KMLLSAASKKKSKAGKGDANKEDESS-KNDSAQPVTITLLFKRYVFDTQKKMIQ-S
* :*:.* **:::**:*:*.:::**: :.:.:* *.::* ********:*:*:* .
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