SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Selenoprotein P (Sel P)
| DESCRIPCIÓN | Selenoproteína. Z(-):14505243...14500506. |
| SECISearch | Un elemento predicho en la cadena antisense. Z:subseq(14495243,10000):[4227,4136] |
| SELENOPROFILES | No encontrada. |
| COMENTARIOS | Elección: Genewise. A pesar de la ausencia de resultados de Selenoprofiles confirmaríamos la presencia de Sel P en esta región. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
3. RESULTADOS DEL SECISearch
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=60, Nseq=6, Len=461
SPP00000020_1.0 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTV--VALLQAS
SPP00000020_1.0.Z.exonerate MWAGLGLVLVLCLLPGGWAESQ----RCQEPPEWRIGEESPMLNSRGSWQWSLSSKLADT
SPP00000020_1.0.Z.genewise MWAGLGLVLVLCLLPGGWAESQ----RCQEPPEWRIGEESPMLNSRGXVAV--VALLQAS
SPP00000074_1.0 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSSGSVTV--VALLQAS
SPP00000074_1.0.Z.exonerate MWAGLGLVLVLCLLPGGWAESQ----RCQEPPEWRIGEESPMLNSRGSWQWSLSSKLADT
SPP00000074_1.0.Z.genewise MWAGLGLVLVLCLLPGGWAESQ----RCQEPPEWRIGEESPMLNSRGXVAV--VALLQAS
** .***.*.*****.* :*** *::** * * ::.***** * : * :
SPP00000020_1.0 UYLCILQASKLEDLRVKLKKEGYSNISYIVVNH-QGISSRLKYTHLKNKVSEHIPVYQQE
SPP00000020_1.0.Z.exonerate -----CACCRLPDWRTCESRTKDWSISHMWLSTIRVLIPKRNFTYYR-KVFQTILLSTNK
SPP00000020_1.0.Z.genewise UYLCLLQASRLEDLRVKLENEGLVNISYVVVNH-QSPHSQKKFHLLQESVSDHITVYQQD
SPP00000074_1.0 UYLCILQASKR-SCRVKLKKEGYFHISYIVVNH-QGISSRLKYTHLKNKVSEHIPVYQQE
SPP00000074_1.0.Z.exonerate -----CACCRLPDWRTCESRTKDWSISHMWLSTIRVLIPKRNFTYYR-KVFQTILLSTNK
SPP00000074_1.0.Z.genewise UYLCLLQASRLEDLRVKLENEGLVNISYVVVNH-QSPHSQKKFHLLQESVSDHITVYQQD
..: . *. .. **:: :. : .: :: : .* : * : :.
SPP00000020_1.0 ENQTDVWTLLNGS-KDDFLIYDRCGRLVYHLGLPFSF----------LTFPYVEEAIKIA
SPP00000020_1.0.Z.exonerate M----ITKLMSGLLMETKMIFSSMTDVVVYITWVFPIPSCLSDMKKPLRLHTVKTSVEIA
SPP00000020_1.0.Z.genewise DHQADVWTTLNGN-KDDFLIYDRCGRLVYHLGLPYSF----------LSFRYVEEAIKIA
SPP00000074_1.0 ENQTDVWTLLNGS-KDDFLIYDRCGRLVYHLGLPFSF----------LTFPYVEEAIKIA
SPP00000074_1.0.Z.exonerate M----ITKLMSGLLMETKMIFSSMTDVVVYITWVFPIPSCLSDMKKPLRLHTVKTSVEIA
SPP00000074_1.0.Z.genewise DHQADVWTTLNGN-KDDFLIYDRCGRLVYHLGLPYSF----------LSFRYVEEAIKIA
: . :.* : :*:. :* :: :.: * : *: :::**
SPP00000020_1.0 YC--EKKCGNCSLTTLKDED-F--------------------------------CKRVSL
SPP00000020_1.0.Z.exonerate LTRGKKKTTYESLFALIKKDNFEYMLFIGHTTTTTTIVRVGVIPKIRTIRPLLNLKDVTL
SPP00000020_1.0.Z.genewise YC--ENKCGNCSY-----------------------------------------------
SPP00000074_1.0 YC--EKKCGNCSLTTLKDED-F--------------------------------CKRVSL
SPP00000074_1.0.Z.exonerate LTRGKKKTTYESLFALIKKDNFEYMLFIGHTTTTTTIVRVGVIPKIRTIRPLLNLKDVTL
SPP00000074_1.0.Z.genewise YC--ENKCGNCSY-----------------------------------------------
::* *
SPP00000020_1.0 ATVDKT-------------------VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAP
SPP00000020_1.0.Z.exonerate TMVDVREFLTITDMIKVAMIRKLFLREKVWKFFHM---------------LQNYEKRGKP
SPP00000020_1.0.Z.genewise ------------------------------------------------------------
SPP00000074_1.0 ATVDKT-------------------VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAP
SPP00000074_1.0.Z.exonerate TMVDVREFLTITDMIKVAMIRKLFLREKVWKFFHM---------------LQNYEKRGKP
SPP00000074_1.0.Z.genewise ------------------------------------------------------------
SPP00000020_1.0 NAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLP--
SPP00000020_1.0.Z.exonerate SVKTSLE-TGR--------QHQTQQP------VADA--VIVDTFCLKSEILSLDSVMEHF
SPP00000020_1.0.Z.genewise ------------------------------------------------------------
SPP00000074_1.0 NAPTHPAPPGLHHHHKHKGQHRQGHPENQDMPGSEDLQDLQKKLCRKRCINQLLCKLP--
SPP00000074_1.0.Z.exonerate SVKTSLE-TGR--------QHQTQQP------VADA--VIVDTFCLKSEILSLDSVMEHF
SPP00000074_1.0.Z.genewise ------------------------------------------------------------
SPP00000020_1.0 ----------TDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENIT
SPP00000020_1.0.Z.exonerate QVRAGDMASCQRTSLNPDSDVCS-------------------------------------
SPP00000020_1.0.Z.genewise ------------------------------------------------------------
SPP00000074_1.0 ----------KDSELAPRSCCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENIT
SPP00000074_1.0.Z.exonerate QVRAGDMASCQRTSLNPDSDVCS-------------------------------------
SPP00000074_1.0.Z.genewise ------------------------------------------------------------
SPP00000020_1.0 ESCQURLPPAAUQISQQLIPTEASASURUKNQAKKUEUPSN
SPP00000020_1.0.Z.exonerate ---------------------------------------LL
SPP00000020_1.0.Z.genewise ----------------------------------------T
SPP00000074_1.0 ESCQURLPPAAUQISQQLIPTEASTSUCUKNQAKKUEUPSN
SPP00000074_1.0.Z.exonerate ---------------------------------------LL
SPP00000074_1.0.Z.genewise ----------------------------------------T
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=98, Nseq=2, Len=381
SPP00000020_1.0 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY
SPP00000020_1.0.Z.genewise MWAGLGLVLVLCLLPGGWAESQ----RCQEPPEWRIGEESPMLNSRGXVAVVALLQASUY
** .***.*.*****.* :*** *::** * * ::.*****.* *:******** *
SPP00000020_1.0 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ
SPP00000020_1.0.Z.genewise LCLLQASRLEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQ
**:****:********::** ****:*****. *: *: *::.**:**.****:::*
SPP00000020_1.0 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL
SPP00000020_1.0.Z.genewise ADVWTTLNGNKDDFLIYDRCGRLVYHLGLPYSFLSFRYVEEAIKIAYCENKCGNCSY---
:**** ***.********************:***:* ************:******
SPP00000020_1.0 KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP
SPP00000020_1.0.Z.genewise ------------------------------------------------------------
SPP00000020_1.0 PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSU
SPP00000020_1.0.Z.genewise ------------------------------------------------------------
SPP00000020_1.0 CCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQQLIP
SPP00000020_1.0.Z.genewise ------------------------------------------------------------
SPP00000020_1.0 TEASASURUKNQAKKUEUPSN
SPP00000020_1.0.Z.genewise --------------------T
.
......................................................................................................................................................................................................................................................
RESULTADOS DEL SECISearch
>Z:subseq(14495243,10000):[4227,4136] [4136 - 4227] (SECIS on complementary strand) - Free Energy: -18.55 AAGCAGCUUUGAAAGCAUACACCACAAUUAAUGAUGAUUGAAUAGGAAAAUUAUUACCCCUAUGAAAACUGAAUCUUUUUGUGGUGAAUGCU
_[4227,4136].png)
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