SPPGPx3bprecursor_Xenopus gi|371559166|gb|JH584667.1| 61.04 77 30 1 155 231 1127797 1127570 3e-32 99.4 SPPGPx3bprecursor_Xenopus gi|371559166|gb|JH584667.1| 53.85 78 33 2 8 82 1130060 1129836 1e-12 76.3 SPPGPx3bprecursor_Xenopus gi|371559166|gb|JH584667.1| 73.68 38 10 0 119 156 1128021 1127908 3e-32 63.2 SPPGPx3bprecursor_Xenopus gi|371559166|gb|JH584667.1| 62.50 40 15 0 84 123 1129203 1129084 3e-04 48.1 SPPGPx3bprecursor_Xenopus gi|371559413|gb|JH584420.1| 44.95 109 56 3 111 215 870278 870601 3e-17 91.3 SPPGPx3bprecursor_Xenopus gi|371559183|gb|JH584650.1| 41.82 55 32 1 167 221 3168961 3169122 3e-06 55.1 SPPGPx3bprecursor_Xenopus gi|371559183|gb|JH584650.1| 42.47 73 41 3 42 113 3166094 3166306 6e-06 53.9 SPPGPx3bprecursor_Xenopus gi|371559183|gb|JH584650.1| 50.98 51 25 0 110 160 3167778 3167930 1e-04 49.7 SPPGPx3bprecursor_Xenopus gi|371559115|gb|JH584718.1| 34.34 99 64 2 65 162 653360 653079 2e-05 52.4 SPPGPx3bprecursor_Xenopus gi|371559115|gb|JH584718.1| 33.67 98 55 3 133 220 649084 648809 9e-05 50.1 SPPGPx3bprecursor_Xenopus gi|371559346|gb|JH584487.1| 41.77 79 45 3 68 145 6097399 6097620 3e-05 51.6 TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPPGPx3bprecursor_Xenopus (236 letters) Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/genom e.fa 80,983 sequences; 2,589,728,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|JH584667.1| Chrysemys picta bellii unplaced genomic scaffold ... 99 3e-32 gb|JH584420.1| Chrysemys picta bellii unplaced genomic scaffold ... 91 3e-17 gb|JH584650.1| Chrysemys picta bellii unplaced genomic scaffold ... 55 3e-06 gb|JH584718.1| Chrysemys picta bellii unplaced genomic scaffold ... 52 2e-05 gb|JH584487.1| Chrysemys picta bellii unplaced genomic scaffold ... 52 3e-05 >gb|JH584667.1| Chrysemys picta bellii unplaced genomic scaffold Group278, whole genome shotgun sequence Length = 5394641 Score = 99.4 bits (246), Expect(2) = 3e-32 Identities = 47/77 (61%), Positives = 59/77 (76%) Frame = -2 Query: 155 LKNSCPPVGDTFGNPPFRLNWEPLKVNDIKWNFEKFLVGPDGHAVKRWHPRTSVAQVRRD 214 L+NSCPPV ++FG+P RL WEPLK++DIKWNFEKFLVGP G V RW PRT++A V+ D Sbjct: 1127797 LQNSCPPVVESFGDPK-RLFWEPLKIHDIKWNFEKFLVGPTGRPVMRWGPRTNLAVVKND 1127621 Query: 215 VVSYIKLQQGTQRLLML 231 +V Y+K + QR L L Sbjct: 1127620 IVDYMKRRVFGQRRLPL 1127570 Score = 76.3 bits (186), Expect = 1e-12 Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Frame = -1 Query: 8 LLMLPCFLAAFINAQNEV---DQKSVDCYNSDNSAEGSIYDYGATTIDGSRFIPFKEYQG 64 L++ PC L A + V VDCYNS EG+IY YGA TIDG +IPF +Y+G Sbjct: 1130060 LVIRPCCLPLSSPAPSHVLCLAVFQVDCYNS---VEGTIYKYGAVTIDGQEYIPFGKYKG 1129890 Query: 65 KYLLFVNVATFUGLTMQY 82 K +LFVNVAT+ GLTMQY Sbjct: 1129889 KMILFVNVATY*GLTMQY 1129836 Score = 63.2 bits (152), Expect(2) = 3e-32 Identities = 28/38 (73%), Positives = 31/38 (81%) Frame = -3 Query: 119 PLGLKYVRPGTNFVPNFQLFEKKDVNGWKEQKFYTFLK 156 P +YVRPG FVPNFQLF+K DVNG +EQKFYTFLK Sbjct: 1128021 PFDFRYVRPGGGFVPNFQLFQKGDVNGEEEQKFYTFLK 1127908 Score = 48.1 bits (113), Expect = 3e-04 Identities = 25/40 (62%), Positives = 26/40 (65%) Frame = -3 Query: 84 ELNALHEELKSDNFVILGFPCNQFGLQEPGRNEEIPLGLK 123 ELNAL +EL VIL FP NQFG QEPG N EI LK Sbjct: 1129203 ELNALQKELAPHGLVILAFPSNQFGKQEPGDNAEILPALK 1129084 >gb|JH584420.1| Chrysemys picta bellii unplaced genomic scaffold Group31, whole genome shotgun sequence Length = 981918 Score = 91.3 bits (225), Expect = 3e-17 Identities = 49/109 (44%), Positives = 63/109 (57%), Gaps = 4/109 (3%) Frame = +2 Query: 111 EPGRNEEIPLGLKYVRPGTNFVPNFQLFEKKDVNGWKEQKFYTFLKNSCP-PVGDTFG-- 167 E NEEI L LK+VRPG + PNF +FEK DVNG +TFLK + P P D Sbjct: 870278 ENATNEEILLSLKHVRPGNGYEPNFTMFEKCDVNGANAHPLFTFLKEALPFPHDDPMSLM 870457 Query: 168 -NPPFRLNWEPLKVNDIKWNFEKFLVGPDGHAVKRWHPRTSVAQVRRDV 215 NP + + W P+ NDI WNFEKFL+G DG KR+ +++ D+ Sbjct: 870458 TNPQY-IIWSPVCRNDISWNFEKFLIGRDGVPFKRYSRHFETIKIQDDI 870601 >gb|JH584650.1| Chrysemys picta bellii unplaced genomic scaffold Group261, whole genome shotgun sequence Length = 5063696 Score = 55.1 bits (131), Expect = 3e-06 Identities = 23/55 (41%), Positives = 35/55 (63%) Frame = +1 Query: 167 GNPPFRLNWEPLKVNDIKWNFEKFLVGPDGHAVKRWHPRTSVAQVRRDVVSYIKL 221 G+P F + W P++ +D+ WNFEKFLVGP+G KR+ P+ + D+ +KL Sbjct: 3168961 GDPKFVV-WSPVRRDDLSWNFEKFLVGPEGEPFKRYSPKFQTIAIEPDIQRLLKL 3169122 Score = 53.9 bits (128), Expect = 6e-06 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +2 Query: 42 SIYDYGATTIDGSRFIPFKEYQGKYLLFVNVATFUGLTMQ-YPELNALHEELKSDNFVIL 100 S YD AT I G + + F ++G+ +L NVA+ G T++ Y +LN L V+L Sbjct: 3166094 SFYDLSATDIHGEK-VDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARYPR-RLVVL 3166267 Query: 101 GFPCNQFGLQEPG 113 GFPCNQFG Q G Sbjct: 3166268 GFPCNQFGYQVCG 3166306 Score = 49.7 bits (117), Expect = 1e-04 Identities = 26/51 (50%), Positives = 29/51 (56%) Frame = +3 Query: 110 QEPGRNEEIPLGLKYVRPGTNFVPNFQLFEKKDVNGWKEQKFYTFLKNSCP 160 QE NEEI LKYVRPG F PNF LF+K VNG + +LK P Sbjct: 3167778 QENCTNEEILNSLKYVRPGAGFEPNFTLFQKCQVNGPDVHPVFAYLKAHLP 3167930 >gb|JH584718.1| Chrysemys picta bellii unplaced genomic scaffold Scfld59, whole genome shotgun sequence Length = 6178864 Score = 52.4 bits (124), Expect = 2e-05 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Frame = -3 Query: 65 KYLLFVNVATFUGLT-MQYPELNALHEELKSDNFVILGFPCNQFGLQEPGRNEEIPLGLK 123 K L VNVA++ T Y L LH E +F +L FPCNQFG EP ++EI K Sbjct: 653360 KASLVVNVASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGELEPSSSQEIESFAK 653181 Query: 124 YVRPGTNFVPNFQLFEKKDVNGWKEQKFYTFLKNSCPPV 162 N+ F +F K + G + + + FL P+ Sbjct: 653180 -----GNYGATFPIFHKIKILGSETEPAFKFLIGKYLPI 653079 Score = 50.1 bits (118), Expect = 9e-05 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 10/98 (10%) Frame = -1 Query: 133 PNFQLFEKKDVNGWKEQKFYTFLKNSCPPVGDTFGNPPFRLNWEPLKVNDI--------- 183 PN Q+ K+ W F LKNSC G R PLKV+D Sbjct: 649084 PNVQI--KRLNTEWGFPFFKRLLKNSCSVAKQLQG*QYLR----PLKVSDAFSADSSKKE 648923 Query: 184 -KWNFEKFLVGPDGHAVKRWHPRTSVAQVRRDVVSYIK 220 +WNF K+LV P+G VK W P + +R ++ S I+ Sbjct: 648922 PRWNFWKYLVNPEGKVVKFWRPEEPIENIRAEIASLIR 648809 >gb|JH584487.1| Chrysemys picta bellii unplaced genomic scaffold Group98, whole genome shotgun sequence Length = 15338546 Score = 51.6 bits (122), Expect = 3e-05 Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +1 Query: 68 LFVNVATFUGLT-MQYPELNALHEELKSDNFVILGFPCNQFGLQEPGRNEEIPLGLKYVR 126 L VNVA+ G T Y L L +L S +F +L FPCNQFG QEP N+EI + R Sbjct: 6097399 LVVNVASECGFTDSHYKALQQLQRDLGSHHFNVLAFPCNQFGQQEPDSNKEIE---SFAR 6097569 Query: 127 PGTNFVPNFQLFEKKDVNG 145 + +F +F K V G Sbjct: 6097570 --KTYGASFPMFSKIAVTG 6097620 Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/gen ome.fa Posted date: Oct 24, 2012 8:30 PM Number of letters in database: 2,589,728,838 Number of sequences in database: 80,983 Lambda K H 0.321 0.141 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 788,858,833 Number of Sequences: 80983 Number of extensions: 12876527 Number of successful extensions: 42355 Number of sequences better than 1.0e-03: 5 Number of HSP's better than 0.0 without gapping: 2534 Number of HSP's successfully gapped in prelim test: 498 Number of HSP's that attempted gapping in prelim test: 11323 Number of HSP's gapped (non-prelim): 36857 length of query: 236 length of database: 863,242,946 effective HSP length: 126 effective length of query: 110 effective length of database: 853,039,088 effective search space: 93834299680 effective search space used: 93834299680 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 109 (46.6 bits)