SPPTR3_gallus gi|371559298|gb|JH584535.1| 60.98 82 32 1 196 277 4173870 4174103 5e-22 97.8 SPPTR3_gallus gi|371559298|gb|JH584535.1| 82.86 35 6 0 71 105 4170451 4170555 1e-09 67.8 SPPTR3_gallus gi|371559298|gb|JH584535.1| 68.75 48 15 0 333 380 4176559 4176702 2e-09 67.0 SPPTR3_gallus gi|371559298|gb|JH584535.1| 60.87 46 18 0 451 496 4182235 4182372 4e-09 66.2 SPPTR3_gallus gi|371559298|gb|JH584535.1| 72.22 36 10 0 385 420 4176962 4177069 1e-07 61.6 SPPTR3_gallus gi|371559298|gb|JH584535.1| 48.94 47 24 0 111 157 4171627 4171767 7e-07 58.9 SPPTR3_gallus gi|371559298|gb|JH584535.1| 51.35 37 18 1 164 200 4173661 4173768 5e-22 32.0 SPPTR3_gallus gi|371559395|gb|JH584438.1| 87.76 49 6 0 67 115 4454452 4454306 1e-21 107 SPPTR3_gallus gi|371559395|gb|JH584438.1| 65.15 66 23 0 252 317 4433903 4433706 2e-17 94.0 SPPTR3_gallus gi|371559395|gb|JH584438.1| 86.96 46 6 0 311 356 4421660 4421523 2e-14 84.0 SPPTR3_gallus gi|371559395|gb|JH584438.1| 81.40 43 8 0 476 518 4408176 4408048 4e-13 79.7 SPPTR3_gallus gi|371559395|gb|JH584438.1| 51.32 76 26 1 425 489 4411039 4410812 2e-10 70.9 SPPTR3_gallus gi|371559395|gb|JH584438.1| 80.00 40 8 0 355 394 4415538 4415419 4e-09 66.2 SPPTR3_gallus gi|371559395|gb|JH584438.1| 87.50 32 4 0 389 420 4415178 4415083 8e-08 62.0 SPPTR3_gallus gi|371559395|gb|JH584438.1| 83.33 30 5 0 116 145 4453975 4453886 1e-05 55.1 SPPTR3_gallus gi|371559116|gb|JH584717.1| 66.67 81 27 1 198 278 1123570 1123800 6e-21 105 SPPTR3_gallus gi|371559116|gb|JH584717.1| 82.86 35 6 0 71 105 1119957 1120061 1e-16 67.8 SPPTR3_gallus gi|371559116|gb|JH584717.1| 64.44 45 16 0 452 496 1151163 1151297 1e-09 67.8 SPPTR3_gallus gi|371559116|gb|JH584717.1| 52.94 51 24 0 107 157 1121300 1121452 4e-08 63.2 SPPTR3_gallus gi|371559116|gb|JH584717.1| 65.22 46 16 0 332 377 1139710 1139847 6e-08 62.4 SPPTR3_gallus gi|371559116|gb|JH584717.1| 66.67 36 12 0 385 420 1145111 1145218 7e-06 55.5 SPPTR3_gallus gi|371559116|gb|JH584717.1| 65.38 26 9 0 46 71 1119763 1119840 1e-16 43.9 TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPPTR3_gallus (518 letters) Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/genom e.fa 80,983 sequences; 2,589,728,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|JH584535.1| Chrysemys picta bellii unplaced genomic scaffold ... 98 5e-22 gb|JH584438.1| Chrysemys picta bellii unplaced genomic scaffold ... 107 1e-21 gb|JH584717.1| Chrysemys picta bellii unplaced genomic scaffold ... 105 6e-21 >gb|JH584535.1| Chrysemys picta bellii unplaced genomic scaffold Group146, whole genome shotgun sequence Length = 14049576 Score = 97.8 bits (242), Expect(2) = 5e-22 Identities = 50/82 (60%), Positives = 62/82 (75%) Frame = +3 Query: 196 ITSDDLFWLKDSPGKTLVVGASYVSLECAGFLTGIGLDTTVIMRIIMRSIPLRGFDQQMA 255 + SDDLF L PGKTL+VGASYV+LECAGFL GIGLD TV ++RSI LRGFDQ+MA Sbjct: 4173870 LLSDDLFSLPYCPGKTLIVGASYVALECAGFLAGIGLDVTV----MVRSILLRGFDQEMA 4174037 Query: 256 SLVTEHMESYGTKFLKKCVPAK 277 +ME++G KF++K VP + Sbjct: 4174038 ERAGAYMETHGVKFIRKFVPTQ 4174103 Score = 67.8 bits (164), Expect = 1e-09 Identities = 29/35 (82%), Positives = 33/35 (94%) Frame = +1 Query: 71 GLGGTCVNVGCIPKKLMHQAALLGGALKDAQHYGW 105 GLGGTCVNVGCIPKKLMHQAALLG AL+D++ +GW Sbjct: 4170451 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGW 4170555 Score = 67.0 bits (162), Expect = 2e-09 Identities = 33/48 (68%), Positives = 38/48 (79%) Frame = +1 Query: 333 GKIIVDASEATSVPHIYAIGDITEGRPELTPTAIAAGKLLARRLFGHS 380 GKI V E T+VPH+YAIGDI +G+ ELTP AI AG+LLARRLFG S Sbjct: 4176559 GKIPVTDEEQTNVPHVYAIGDILDGKLELTPVAIQAGRLLARRLFGGS 4176702 Score = 66.2 bits (160), Expect = 4e-09 Identities = 28/46 (60%), Positives = 34/46 (73%) Frame = +1 Query: 451 EQRILGLHFIGPNAGEVIQGFALGIKCGATYPQLMKTIGIHPTCAE 496 + R++G H +GPNAGE+ QGF IKCG T L +TIGIHPTCAE Sbjct: 4182235 KNRVIGFHVLGPNAGEITQGFGAAIKCGLTKELLDETIGIHPTCAE 4182372 Score = 61.6 bits (148), Expect = 1e-07 Identities = 26/36 (72%), Positives = 31/36 (86%) Frame = +2 Query: 385 DYDNVPTTVFTPLEYGCVGLSEEKAVQCYGSDNVEV 420 DY NVPTTVFTPLEYGC GL EE+A++ YG +N+EV Sbjct: 4176962 DYVNVPTTVFTPLEYGCCGLPEERAIEEYGKENIEV 4177069 Score = 58.9 bits (141), Expect = 7e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +1 Query: 111 VHHNWSVMAQAVQNYVKSLNWGHRVQLQDKKVKYFNMKGSFSDSHTV 157 V HNW M +A+QNY+ SLNWG+RV L++K V Y N F + H + Sbjct: 4171627 VKHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYVNAYAEFIEPHKI 4171767 Score = 32.0 bits (71), Expect(2) = 5e-22 Identities = 19/37 (51%), Positives = 23/37 (62%) Frame = +1 Query: 164 GKETTLTAEKIVIATGGRPKYPTHITGALEYGITSDD 200 G+ET TA+ V+ATG RP+Y I G EY IT D Sbjct: 4173661 GQETFHTAQTFVLATGERPRY-LGIPGDKEYCITR*D 4173768 >gb|JH584438.1| Chrysemys picta bellii unplaced genomic scaffold Group49, whole genome shotgun sequence Length = 9859369 Score = 107 bits (268), Expect = 1e-21 Identities = 43/49 (87%), Positives = 48/49 (97%) Frame = -1 Query: 67 GTKWGLGGTCVNVGCIPKKLMHQAALLGGALKDAQHYGWSVAHPVHHNW 115 GTKWGLGGTCVNVGCIPKKLMHQAALLG ALKDAQHYGW+++HP+HH+W Sbjct: 4454452 GTKWGLGGTCVNVGCIPKKLMHQAALLGSALKDAQHYGWNISHPIHHDW 4454306 Score = 94.0 bits (232), Expect = 2e-17 Identities = 43/66 (65%), Positives = 53/66 (80%) Frame = -3 Query: 252 QQMASLVTEHMESYGTKFLKKCVPAKVEKLESSRLQVTWKNTELGTEETDSFDTVMWAVG 311 QQM+ LVT++MES GT+FLKKC P+KVEKL+S +LQVTWK + G EE D FDTVMWAVG Sbjct: 4433903 QQMSFLVTDYMESCGTRFLKKCTPSKVEKLKSGKLQVTWKYADSGKEEMDDFDTVMWAVG 4433724 Query: 312 RVPDIK 317 ++ K Sbjct: 4433723 KLDHFK 4433706 Score = 84.0 bits (206), Expect = 2e-14 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = -3 Query: 311 GRVPDIKTLNLDSVGVKTNSETGKIIVDASEATSVPHIYAIGDITE 356 GR PD KTLNL+++GVK NSETGKIIVDASEATSVPHIYAIGDITE Sbjct: 4421660 GRAPDTKTLNLETIGVKINSETGKIIVDASEATSVPHIYAIGDITE 4421523 Score = 79.7 bits (195), Expect = 4e-13 Identities = 35/43 (81%), Positives = 39/43 (90%) Frame = -2 Query: 476 KCGATYPQLMKTIGIHPTCAEEITKLHITKRSGLDATVTGCUG 518 +CGATY Q+MKT+GIHPTCAEE+TKL ITKRSGLDA VTGC G Sbjct: 4408176 RCGATYAQMMKTVGIHPTCAEEVTKLRITKRSGLDAKVTGC*G 4408048 Score = 70.9 bits (172), Expect = 2e-10 Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 11/76 (14%) Frame = -1 Query: 425 YKPLEFTVAERDAAQCYIKMVCLREREQRILGLHFIGPNAGEVIQGFALGIK-------- 476 + P E+ + I+MVCLR++EQRILGLHFIGPNAGEVIQGFALGIK Sbjct: 4411039 FSPASCPF*EKLSVMFCIQMVCLRKKEQRILGLHFIGPNAGEVIQGFALGIK*VQKNVST 4410860 Query: 477 ---CGATYPQLMKTIG 489 C Y +++K IG Sbjct: 4410859 FKACFLGYCKIIKDIG 4410812 Score = 66.2 bits (160), Expect = 4e-09 Identities = 32/40 (80%), Positives = 35/40 (87%) Frame = -2 Query: 355 TEGRPELTPTAIAAGKLLARRLFGHSSELMDYDNVPTTVF 394 ++GRPELTPTAIAAGKLLA+RLFG SSELMDYDNV F Sbjct: 4415538 SQGRPELTPTAIAAGKLLAQRLFGQSSELMDYDNVSCYFF 4415419 Score = 62.0 bits (149), Expect = 8e-08 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -2 Query: 389 VPTTVFTPLEYGCVGLSEEKAVQCYGSDNVEV 420 VPTTVFTPLEYGCVGLSEEKAV+ YG DN+EV Sbjct: 4415178 VPTTVFTPLEYGCVGLSEEKAVEHYGLDNIEV 4415083 Score = 55.1 bits (131), Expect = 1e-05 Identities = 25/30 (83%), Positives = 28/30 (93%) Frame = -1 Query: 116 SVMAQAVQNYVKSLNWGHRVQLQDKKVKYF 145 SVMA+AVQNYVKSLNWGHRVQLQDK +K + Sbjct: 4453975 SVMAEAVQNYVKSLNWGHRVQLQDK*MKLY 4453886 >gb|JH584717.1| Chrysemys picta bellii unplaced genomic scaffold Scfld58, whole genome shotgun sequence Length = 6467054 Score = 105 bits (262), Expect = 6e-21 Identities = 54/81 (66%), Positives = 64/81 (79%) Frame = +1 Query: 198 SDDLFWLKDSPGKTLVVGASYVSLECAGFLTGIGLDTTVIMRIIMRSIPLRGFDQQMASL 257 SDDLF L PGKTLVVGASYV+LECAGFL G+GLD TV ++RSI LRGFDQ+MA+ Sbjct: 1123570 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTV----MVRSILLRGFDQEMANK 1123737 Query: 258 VTEHMESYGTKFLKKCVPAKV 278 + EHME +G KF+K+ VP KV Sbjct: 1123738 IGEHMEEHGVKFIKEFVPTKV 1123800 Score = 67.8 bits (164), Expect(2) = 1e-16 Identities = 29/35 (82%), Positives = 33/35 (94%) Frame = +3 Query: 71 GLGGTCVNVGCIPKKLMHQAALLGGALKDAQHYGW 105 GLGGTCVNVGCIPKKLMHQAALLG AL+D++ +GW Sbjct: 1119957 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGW 1120061 Score = 67.8 bits (164), Expect = 1e-09 Identities = 29/45 (64%), Positives = 34/45 (75%) Frame = +3 Query: 452 QRILGLHFIGPNAGEVIQGFALGIKCGATYPQLMKTIGIHPTCAE 496 +R++G H +GPNAGEV QGF+ IKCG T QL TIGIHP CAE Sbjct: 1151163 ERVIGFHVLGPNAGEVTQGFSAAIKCGLTKAQLDNTIGIHPVCAE 1151297 Score = 63.2 bits (152), Expect = 4e-08 Identities = 27/51 (52%), Positives = 35/51 (68%) Frame = +2 Query: 107 VAHPVHHNWSVMAQAVQNYVKSLNWGHRVQLQDKKVKYFNMKGSFSDSHTV 157 V+ V H+W M +AVQNY+ SLNWG+RV L++KKV Y N G F HT+ Sbjct: 1121300 VSSAVKHSWETMTEAVQNYIGSLNWGYRVSLREKKVTYENAFGEFVGPHTI 1121452 Score = 62.4 bits (150), Expect = 6e-08 Identities = 30/46 (65%), Positives = 37/46 (80%) Frame = +1 Query: 332 TGKIIVDASEATSVPHIYAIGDITEGRPELTPTAIAAGKLLARRLF 377 +GKI V E T+VP+IYAIGD+ EG+ ELTP AI AG+LLARRL+ Sbjct: 1139710 SGKIPVSDEEQTNVPYIYAIGDVLEGKLELTPVAIQAGRLLARRLY 1139847 Score = 55.5 bits (132), Expect = 7e-06 Identities = 24/36 (66%), Positives = 29/36 (80%) Frame = +2 Query: 385 DYDNVPTTVFTPLEYGCVGLSEEKAVQCYGSDNVEV 420 DY NVPTTVFTPLEYG G SEE A++ +G +N+EV Sbjct: 1145111 DYVNVPTTVFTPLEYGACGFSEETALEKFGEENIEV 1145218 Score = 43.9 bits (102), Expect(2) = 1e-16 Identities = 17/26 (65%), Positives = 23/26 (88%) Frame = +1 Query: 46 KEAAQFGKNVAVLDYVEPSPRGTKWG 71 +EAA++GK V VLDYV P+P+GT+WG Sbjct: 1119763 QEAAKYGKKVLVLDYVTPTPQGTRWG 1119840 Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/gen ome.fa Posted date: Oct 24, 2012 8:30 PM Number of letters in database: 2,589,728,838 Number of sequences in database: 80,983 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,767,385,975 Number of Sequences: 80983 Number of extensions: 29346017 Number of successful extensions: 122982 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 2904 Number of HSP's successfully gapped in prelim test: 959 Number of HSP's that attempted gapping in prelim test: 28475 Number of HSP's gapped (non-prelim): 109118 length of query: 518 length of database: 863,242,946 effective HSP length: 135 effective length of query: 383 effective length of database: 852,310,241 effective search space: 326434822303 effective search space used: 326434822303 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)