SPPTGR_gallus gi|371559298|gb|JH584535.1| 89.74 78 8 0 285 362 4173870 4174103 1e-50 146 SPPTGR_gallus gi|371559298|gb|JH584535.1| 93.48 46 3 0 540 585 4182238 4182375 8e-18 95.5 SPPTGR_gallus gi|371559298|gb|JH584535.1| 81.48 54 10 0 418 471 4176550 4176711 2e-17 94.0 SPPTGR_gallus gi|371559298|gb|JH584535.1| 83.33 48 8 0 201 248 4171627 4171770 3e-17 93.6 SPPTGR_gallus gi|371559298|gb|JH584535.1| 68.33 60 18 1 161 219 4170451 4170630 2e-14 84.0 SPPTGR_gallus gi|371559298|gb|JH584535.1| 78.57 42 9 0 1 42 4155746 4155871 4e-13 79.7 SPPTGR_gallus gi|371559298|gb|JH584535.1| 85.71 42 6 0 248 289 4173643 4173768 1e-50 79.3 SPPTGR_gallus gi|371559298|gb|JH584535.1| 83.78 37 6 0 472 508 4176959 4177069 2e-11 73.9 SPPTGR_gallus gi|371559298|gb|JH584535.1| 69.05 42 13 0 506 547 4180648 4180773 5e-11 72.8 SPPTGR_gallus gi|371559298|gb|JH584535.1| 72.97 37 10 0 62 98 4166384 4166494 4e-08 63.2 SPPTGR_gallus gi|371559298|gb|JH584535.1| 67.50 40 12 1 98 136 4167158 4167277 1e-07 62.0 SPPTGR_gallus gi|371559298|gb|JH584535.1| 78.79 33 7 0 362 394 4174405 4174503 1e-06 58.2 SPPTGR_gallus gi|371559116|gb|JH584717.1| 90.91 77 7 0 287 363 1123570 1123800 2e-32 144 SPPTGR_gallus gi|371559116|gb|JH584717.1| 68.33 60 19 0 412 471 1139686 1139865 1e-16 91.3 SPPTGR_gallus gi|371559116|gb|JH584717.1| 76.47 51 12 0 201 251 1121312 1121464 2e-29 89.7 SPPTGR_gallus gi|371559116|gb|JH584717.1| 86.67 45 6 0 541 585 1151166 1151300 8e-15 85.5 SPPTGR_gallus gi|371559116|gb|JH584717.1| 85.00 40 6 0 161 200 1119957 1120076 4e-20 79.3 SPPTGR_gallus gi|371559116|gb|JH584717.1| 69.23 39 12 0 470 508 1145102 1145218 5e-10 69.7 SPPTGR_gallus gi|371559116|gb|JH584717.1| 71.05 38 11 0 249 286 1121584 1121697 2e-29 65.5 SPPTGR_gallus gi|371559116|gb|JH584717.1| 83.87 31 5 0 508 538 1147746 1147838 3e-08 63.5 SPPTGR_gallus gi|371559116|gb|JH584717.1| 73.08 26 7 0 136 161 1119763 1119840 4e-20 44.3 SPPTGR_gallus gi|371559395|gb|JH584438.1| 74.00 50 13 0 156 205 4454455 4454306 7e-16 89.0 SPPTGR_gallus gi|371559015|gb|JH584818.1| 38.81 67 41 0 18 84 1559152 1558952 1e-06 58.2 TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPPTGR_gallus (606 letters) Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/genom e.fa 80,983 sequences; 2,589,728,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|JH584535.1| Chrysemys picta bellii unplaced genomic scaffold ... 146 1e-50 gb|JH584717.1| Chrysemys picta bellii unplaced genomic scaffold ... 144 2e-32 gb|JH584438.1| Chrysemys picta bellii unplaced genomic scaffold ... 89 7e-16 gb|JH584818.1| Chrysemys picta bellii unplaced genomic scaffold ... 58 1e-06 >gb|JH584535.1| Chrysemys picta bellii unplaced genomic scaffold Group146, whole genome shotgun sequence Length = 14049576 Score = 146 bits (369), Expect(2) = 1e-50 Identities = 70/78 (89%), Positives = 75/78 (96%) Frame = +3 Query: 285 ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAEKIG 344 + SDDLFSLPYCPGKTL+VGASYVALECAGFLAG+GLDVTVMVRSILLRGFDQEMAE+ G Sbjct: 4173870 LLSDDLFSLPYCPGKTLIVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQEMAERAG 4174049 Query: 345 AHMETHGVTFIRKFVPTQ 362 A+METHGV FIRKFVPTQ Sbjct: 4174050 AYMETHGVKFIRKFVPTQ 4174103 Score = 95.5 bits (236), Expect = 8e-18 Identities = 43/46 (93%), Positives = 45/46 (97%) Frame = +1 Query: 540 NRVVGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAEV 585 NRV+GFHVLGPNAGE+TQGF AAIKCGLTKELLDETIGIHPTCAEV Sbjct: 4182238 NRVIGFHVLGPNAGEITQGFGAAIKCGLTKELLDETIGIHPTCAEV 4182375 Score = 94.0 bits (232), Expect = 2e-17 Identities = 44/54 (81%), Positives = 51/54 (94%) Frame = +1 Query: 418 EKNGKVPVNDEERTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSSTK 471 ++NGK+PV DEE+TNVP+VYAIGDILDGKLELTPVAIQAG+LLARRL+GGS K Sbjct: 4176550 KRNGKIPVTDEEQTNVPHVYAIGDILDGKLELTPVAIQAGRLLARRLFGGSFIK 4176711 Score = 93.6 bits (231), Expect = 3e-17 Identities = 40/48 (83%), Positives = 45/48 (93%) Frame = +1 Query: 201 VKHNWEIMVEAVQNYIGSLNWGYRLSLREKSVTYQNSYGEFVEPHKIK 248 VKHNWE MVEA+QNYIGSLNWGYR+SLREK+VTY N+Y EF+EPHKIK Sbjct: 4171627 VKHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYVNAYAEFIEPHKIK 4171770 Score = 84.0 bits (206), Expect = 2e-14 Identities = 41/60 (68%), Positives = 49/60 (81%), Gaps = 1/60 (1%) Frame = +1 Query: 161 GLGGTCVNVGCIPKKLMHQAALLGQALKDSRAYGWQYDEQVK-HNWEIMVEAVQNYIGSL 219 GLGGTCVNVGCIPKKLMHQAALLGQAL+DSR +GW+YDEQ + H + +A QN++ L Sbjct: 4170451 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWEYDEQGQ*H*TLVGEDADQNFLFEL 4170630 Score = 79.7 bits (195), Expect = 4e-13 Identities = 33/42 (78%), Positives = 38/42 (90%) Frame = +2 Query: 1 MPPPGQTQLPDWDGLKLRVRTLIATHRVMIFSKSYCPYCHRV 42 MPPPGQ +LPDWD L+LRVRTLI +HRV IFSKSYCPYC++V Sbjct: 4155746 MPPPGQVRLPDWDALRLRVRTLIGSHRVAIFSKSYCPYCNKV 4155871 Score = 79.3 bits (194), Expect(2) = 1e-50 Identities = 36/42 (85%), Positives = 39/42 (92%) Frame = +1 Query: 248 KATNRKGQVTYHTAETFVLATGERPRYLGIPGDKEYCITSDD 289 +ATNRKGQ T+HTA+TFVLATGERPRYLGIPGDKEYCIT D Sbjct: 4173643 QATNRKGQETFHTAQTFVLATGERPRYLGIPGDKEYCITR*D 4173768 Score = 73.9 bits (180), Expect = 2e-11 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = +2 Query: 472 CDYINVPTTVFTPLEYGSCGLAEEKAIEEYGKQNLEV 508 CDY+NVPTTVFTPLEYG CGL EE+AIEEYGK+N+EV Sbjct: 4176959 CDYVNVPTTVFTPLEYGCCGLPEERAIEEYGKENIEV 4177069 Score = 72.8 bits (177), Expect = 5e-11 Identities = 29/42 (69%), Positives = 36/42 (85%) Frame = +1 Query: 506 LEVYHSLFWPLEWTVPGRDNNTCYAKIICNKLDGNRVVGFHV 547 L+VYH+LFWPLEWTVP RDNNTCYAKIICNK D ++ +++ Sbjct: 4180648 LQVYHTLFWPLEWTVPSRDNNTCYAKIICNKHDNVCIINWNL 4180773 Score = 63.2 bits (152), Expect = 4e-08 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = +2 Query: 62 DDGPSIQQVLAELTNQRTVPNVFINGKHIGGCDATYK 98 DDGP+IQQVL E+T+QRTVPNVF+NG HIGG D T++ Sbjct: 4166384 DDGPNIQQVLVEVTSQRTVPNVFVNGAHIGGYDKTFQ 4166494 Score = 62.0 bits (149), Expect = 1e-07 Identities = 27/40 (67%), Positives = 37/40 (92%), Gaps = 1/40 (2%) Frame = +2 Query: 98 KAYENGTLQRILGD-VKDAETYDYDLIVIGGGSGGLACSK 136 +AY++G+LQ++LG+ + DAE YD+DLIV+GGGSGGLACSK Sbjct: 4167158 QAYQSGSLQKVLGNCIDDAEVYDFDLIVVGGGSGGLACSK 4167277 Score = 58.2 bits (139), Expect = 1e-06 Identities = 26/33 (78%), Positives = 29/33 (87%) Frame = +1 Query: 362 QVERLEDGTPGRLKVTAKSTEGPEFFEGEYNTV 394 Q+ERLE+G PGRLKV A+STEGPE EGEYNTV Sbjct: 4174405 QIERLEEGMPGRLKVVAQSTEGPEMVEGEYNTV 4174503 >gb|JH584717.1| Chrysemys picta bellii unplaced genomic scaffold Scfld58, whole genome shotgun sequence Length = 6467054 Score = 144 bits (362), Expect = 2e-32 Identities = 70/77 (90%), Positives = 73/77 (94%) Frame = +1 Query: 287 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAEKIGAH 346 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMA KIG H Sbjct: 1123570 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMANKIGEH 1123749 Query: 347 METHGVTFIRKFVPTQV 363 ME HGV FI++FVPT+V Sbjct: 1123750 MEEHGVKFIKEFVPTKV 1123800 Score = 91.3 bits (225), Expect = 1e-16 Identities = 41/60 (68%), Positives = 54/60 (90%) Frame = +1 Query: 412 IGVKINEKNGKVPVNDEERTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSSTK 471 I ++ ++GK+PV+DEE+TNVPY+YAIGD+L+GKLELTPVAIQAG+LLARRLY G++ K Sbjct: 1139686 ISCLVSCRSGKIPVSDEEQTNVPYIYAIGDVLEGKLELTPVAIQAGRLLARRLYAGATLK 1139865 Score = 89.7 bits (221), Expect(2) = 2e-29 Identities = 39/51 (76%), Positives = 44/51 (86%) Frame = +2 Query: 201 VKHNWEIMVEAVQNYIGSLNWGYRLSLREKSVTYQNSYGEFVEPHKIKATN 251 VKH+WE M EAVQNYIGSLNWGYR+SLREK VTY+N++GEFV PH IK N Sbjct: 1121312 VKHSWETMTEAVQNYIGSLNWGYRVSLREKKVTYENAFGEFVGPHTIKVPN 1121464 Score = 85.5 bits (210), Expect = 8e-15 Identities = 39/45 (86%), Positives = 41/45 (91%) Frame = +3 Query: 541 RVVGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAEV 585 RV+GFHVLGPNAGEVTQGF+AAIKCGLTK LD TIGIHP CAEV Sbjct: 1151166 RVIGFHVLGPNAGEVTQGFSAAIKCGLTKAQLDNTIGIHPVCAEV 1151300 Score = 79.3 bits (194), Expect(2) = 4e-20 Identities = 34/40 (85%), Positives = 39/40 (97%) Frame = +3 Query: 161 GLGGTCVNVGCIPKKLMHQAALLGQALKDSRAYGWQYDEQ 200 GLGGTCVNVGCIPKKLMHQAALLGQAL+DSR +GWQ++E+ Sbjct: 1119957 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFEEK 1120076 Score = 69.7 bits (169), Expect = 5e-10 Identities = 27/39 (69%), Positives = 37/39 (94%) Frame = +2 Query: 470 TKCDYINVPTTVFTPLEYGSCGLAEEKAIEEYGKQNLEV 508 T+CDY+NVPTTVFTPLEYG+CG +EE A+E++G++N+EV Sbjct: 1145102 TQCDYVNVPTTVFTPLEYGACGFSEETALEKFGEENIEV 1145218 Score = 65.5 bits (158), Expect(2) = 2e-29 Identities = 27/38 (71%), Positives = 34/38 (89%) Frame = +1 Query: 249 ATNRKGQVTYHTAETFVLATGERPRYLGIPGDKEYCIT 286 ATN KG+ ++TAE F++ATGERPRYLG+PGDKEYCI+ Sbjct: 1121584 ATNNKGKEKFYTAEKFLIATGERPRYLGVPGDKEYCIS 1121697 Score = 63.5 bits (153), Expect = 3e-08 Identities = 26/31 (83%), Positives = 26/31 (83%) Frame = +3 Query: 508 VYHSLFWPLEWTVPGRDNNTCYAKIICNKLD 538 VYHS FWPLEWTVP RDNN CYAKIICN D Sbjct: 1147746 VYHSYFWPLEWTVPSRDNNKCYAKIICNIQD 1147838 Score = 44.3 bits (103), Expect(2) = 4e-20 Identities = 19/26 (73%), Positives = 21/26 (80%) Frame = +1 Query: 136 KEAATLGKKVMVLDYVVPTPLGTSWG 161 +EAA GKKV+VLDYV PTP GT WG Sbjct: 1119763 QEAAKYGKKVLVLDYVTPTPQGTRWG 1119840 >gb|JH584438.1| Chrysemys picta bellii unplaced genomic scaffold Group49, whole genome shotgun sequence Length = 9859369 Score = 89.0 bits (219), Expect = 7e-16 Identities = 37/50 (74%), Positives = 41/50 (82%) Frame = -1 Query: 156 LGTSWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRAYGWQYDEQVKHNW 205 LGT WGLGGTCVNVGCIPKKLMHQAALLG ALKD++ YGW + H+W Sbjct: 4454455 LGTKWGLGGTCVNVGCIPKKLMHQAALLGSALKDAQHYGWNISHPIHHDW 4454306 >gb|JH584818.1| Chrysemys picta bellii unplaced genomic scaffold Scfld255, whole genome shotgun sequence Length = 2744437 Score = 58.2 bits (139), Expect = 1e-06 Identities = 26/67 (38%), Positives = 42/67 (62%) Frame = -1 Query: 18 RVRTLIATHRVMIFSKSYCPYCHRVKELFSSLGVQYYALELDVTDDGPSIQQVLAELTNQ 77 +++ I+ + V+IFSK+ C YC K+LF + V Y A+ELD+ ++G Q +L ++T Sbjct: 1559152 KIQETISDNCVVIFSKTTCGYCKMAKKLFQDMNVNYTAIELDMYENGSQFQDILHQMTGG 1558973 Query: 78 RTVPNVF 84 RTV F Sbjct: 1558972 RTVSTSF 1558952 Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/gen ome.fa Posted date: Oct 24, 2012 8:30 PM Number of letters in database: 2,589,728,838 Number of sequences in database: 80,983 Lambda K H 0.319 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,056,846,909 Number of Sequences: 80983 Number of extensions: 33676157 Number of successful extensions: 137330 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 2809 Number of HSP's successfully gapped in prelim test: 701 Number of HSP's that attempted gapping in prelim test: 36934 Number of HSP's gapped (non-prelim): 118512 length of query: 606 length of database: 863,242,946 effective HSP length: 137 effective length of query: 469 effective length of database: 852,148,275 effective search space: 399657540975 effective search space used: 399657540975 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)