SPPSelPb_gallus	gi|371559382|gb|JH584451.1|	80.56	72	14	0	303	374	8561228	8561443	5e-26	 122
SPPSelPb_gallus	gi|371559382|gb|JH584451.1|	87.18	39	5	0	374	412	8562680	8562796	3e-13	79.7
SPPSelPb_gallus	gi|371559382|gb|JH584451.1|	80.00	70	10	1	238	303	8556011	8556220	3e-11	73.2
SPPSelPb_gallus	gi|371559093|gb|JH584740.1|	47.89	71	37	0	304	374	3869686	3869898	2e-10	70.5
SPPSelPb_gallus	gi|371559093|gb|JH584740.1|	60.53	38	15	0	374	411	3872515	3872628	2e-07	60.8
SPPSelPb_gallus	gi|371559093|gb|JH584740.1|	60.53	38	15	0	374	411	3874737	3874850	3e-07	60.1

TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPPSelPb_gallus
         (501 letters)

Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/genom
e.fa 
           80,983 sequences; 2,589,728,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH584451.1| Chrysemys picta bellii unplaced genomic scaffold ...   122   5e-26
gb|JH584740.1| Chrysemys picta bellii unplaced genomic scaffold ...    70   2e-10

>gb|JH584451.1| Chrysemys picta bellii unplaced genomic scaffold Group62, whole genome
               shotgun sequence
          Length = 9093893

 Score =  122 bits (306), Expect = 5e-26
 Identities = 58/72 (80%), Positives = 64/72 (88%)
 Frame = +2

Query: 303     RLEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQADVWTTL 362
               RLEDLRVKLENEGLVNISY+VVNHQ  HSQ K H L+E VS++I VYQQD++Q DVWTTL
Sbjct: 8561228 RLEDLRVKLENEGLVNISYMVVNHQGIHSQLKIHTLKEKVSENIIVYQQDENQTDVWTTL 8561407

Query: 363     NGNKDDFLIYDR 374
               NGNKDDFLIYDR
Sbjct: 8561408 NGNKDDFLIYDR 8561443



 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = +2

Query: 374     RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCSY 412
               RCGRLVYHLGLPYSFL+F YVEE+IKIAYCE  CGNCSY
Sbjct: 8562680 RCGRLVYHLGLPYSFLTFPYVEESIKIAYCEYKCGNCSY 8562796



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 41/70 (58%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
 Frame = +2

Query: 238     PAMWAXXXXXXXXXXXXXXXTESQ----RCQEPPEWHIGEESPMLNARGSVAVVALLQAS 293
               PAMW                TESQ    RC+EPPEW I E SPM N R SV VVALLQAS
Sbjct: 8556011 PAMWGGLGLALVLCLLPGGGTESQGSSARCKEPPEWQIEEISPMQNTRSSVTVVALLQAS 8556190

Query: 294     XYLCLLQASR 303
                YLCLLQASR
Sbjct: 8556191 *YLCLLQASR 8556220


>gb|JH584740.1| Chrysemys picta bellii unplaced genomic scaffold Scfld100, whole genome
               shotgun sequence
          Length = 5547169

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 34/71 (47%), Positives = 48/71 (67%)
 Frame = +1

Query: 304     LEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQADVWTTLN 363
               L  LR KL  +GL +ISY++VN ++P S+  F  L+    + + VYQQ+  + DVW  L+
Sbjct: 3869686 LGGLREKLAQDGLADISYMIVNEKAPLSRAMFWELKRRAPEGVPVYQQEILEPDVWQILD 3869865

Query: 364     GNKDDFLIYDR 374
               G+KDDFLIYDR
Sbjct: 3869866 GDKDDFLIYDR 3869898



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +1

Query: 374     RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCS 411
               RCGRL +H+ LPYSFL F+YVE A+++ Y ++ CGNCS
Sbjct: 3872515 RCGRLAFHIPLPYSFLHFRYVESAVRVTYAKDVCGNCS 3872628



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +3

Query: 374     RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCS 411
               RCGRL +H+ LPYSFL F+YVE A+++ Y ++ CGNCS
Sbjct: 3874737 RCGRLAFHIPLPYSFLHFRYVESAMRVTYAKDVCGNCS 3874850


  Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/gen
  ome.fa
    Posted date:  Oct 24, 2012  8:30 PM
  Number of letters in database: 2,589,728,838
  Number of sequences in database:  80,983
  
Lambda     K      H
   0.317    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,567,490,971
Number of Sequences: 80983
Number of extensions: 24579978
Number of successful extensions: 142851
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 3738
Number of HSP's successfully gapped in prelim test: 1011
Number of HSP's that attempted gapping in prelim test: 26901
Number of HSP's gapped (non-prelim): 128273
length of query: 501
length of database: 863,242,946
effective HSP length: 135
effective length of query: 366
effective length of database: 852,310,241
effective search space: 311945548206
effective search space used: 311945548206
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)