SPPSelPa_gallus gi|371559382|gb|JH584451.1| 80.56 72 14 0 64 135 8561228 8561443 3e-26 122 SPPSelPa_gallus gi|371559382|gb|JH584451.1| 49.33 223 111 2 173 393 8572417 8573079 3e-23 112 SPPSelPa_gallus gi|371559382|gb|JH584451.1| 87.18 39 5 0 135 173 8562680 8562796 2e-13 79.7 SPPSelPa_gallus gi|371559382|gb|JH584451.1| 79.41 68 10 1 1 64 8556017 8556220 4e-10 68.9 SPPSelPa_gallus gi|371559093|gb|JH584740.1| 47.89 71 37 0 65 135 3869686 3869898 1e-10 70.5 SPPSelPa_gallus gi|371559093|gb|JH584740.1| 60.53 38 15 0 135 172 3872515 3872628 1e-07 60.8 SPPSelPa_gallus gi|371559093|gb|JH584740.1| 60.53 38 15 0 135 172 3874737 3874850 2e-07 60.1 TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPPSelPa_gallus (393 letters) Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/genom e.fa 80,983 sequences; 2,589,728,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|JH584451.1| Chrysemys picta bellii unplaced genomic scaffold ... 122 3e-26 gb|JH584740.1| Chrysemys picta bellii unplaced genomic scaffold ... 70 1e-10 >gb|JH584451.1| Chrysemys picta bellii unplaced genomic scaffold Group62, whole genome shotgun sequence Length = 9093893 Score = 122 bits (306), Expect = 3e-26 Identities = 58/72 (80%), Positives = 64/72 (88%) Frame = +2 Query: 64 RLEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQADVWTTL 123 RLEDLRVKLENEGLVNISY+VVNHQ HSQ K H L+E VS++I VYQQD++Q DVWTTL Sbjct: 8561228 RLEDLRVKLENEGLVNISYMVVNHQGIHSQLKIHTLKEKVSENIIVYQQDENQTDVWTTL 8561407 Query: 124 NGNKDDFLIYDR 135 NGNKDDFLIYDR Sbjct: 8561408 NGNKDDFLIYDR 8561443 Score = 112 bits (280), Expect = 3e-23 Identities = 80/223 (35%), Positives = 101/223 (45%), Gaps = 2/223 (0%) Frame = +1 Query: 173 YTEPDIDNICENITKKEDENLAGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTQ 232 + P +++IC+NI++ DE A + Q Sbjct: 8572417 FQTPVVEDICKNISQTADEKPA--EEAPKPHNHHSHHHNQRRHHGHRHHHQEGDQLSEEQ 8572590 Query: 233 NHQAPSESQRRHPHNG--RRHRVFNHNRHDQIGSHEQVETLPPGEGVENLPRVTKLUKKG 290 N Q + + R H H R +RV NR Q GS VET P E + +V + KKG Sbjct: 8572591 NQQDSAHAPRNHSHQSSQRHNRVVGRNRQGQKGSQPNVETAPQREVGKVPTQVKRP*KKG 8572770 Query: 291 KTICKNQLTUNWQXXXXXXXXXXCCHCRHLLFEELGNSITUQCRGALPNSCRUHGQLLAE 350 + QLT NWQ C HCRHLLFEE GN+ T C+G LP+SCR HGQLLAE Sbjct: 8572771 TSS*NKQLT*NWQKVSQSTSSS*C*HCRHLLFEESGNAAT*HCQGELPSSCR*HGQLLAE 8572950 Query: 351 DITESUQURLLXXXXXXXXXXXXXXXDTUQUQERAGNUAUKTN 393 +ITES Q RL DT Q + + GN A KTN Sbjct: 8572951 NITES*Q*RLPTAA*HSPAASEHETSDT*Q*EGKTGN*A*KTN 8573079 Score = 79.7 bits (195), Expect = 2e-13 Identities = 34/39 (87%), Positives = 36/39 (92%) Frame = +2 Query: 135 RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCSY 173 RCGRLVYHLGLPYSFL+F YVEE+IKIAYCE CGNCSY Sbjct: 8562680 RCGRLVYHLGLPYSFLTFPYVEESIKIAYCEYKCGNCSY 8562796 Score = 68.9 bits (167), Expect = 4e-10 Identities = 39/68 (57%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Frame = +2 Query: 1 MWAXXXXXXXXXXXXXXXTESQ----RCQEPPEWHIGEESPMLNARGSVAVVALLQASUY 56 MW TESQ RC+EPPEW I E SPM N R SV VVALLQAS Y Sbjct: 8556017 MWGGLGLALVLCLLPGGGTESQGSSARCKEPPEWQIEEISPMQNTRSSVTVVALLQAS*Y 8556196 Query: 57 LCLLQASR 64 LCLLQASR Sbjct: 8556197 LCLLQASR 8556220 >gb|JH584740.1| Chrysemys picta bellii unplaced genomic scaffold Scfld100, whole genome shotgun sequence Length = 5547169 Score = 70.5 bits (171), Expect = 1e-10 Identities = 34/71 (47%), Positives = 48/71 (67%) Frame = +1 Query: 65 LEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQADVWTTLN 124 L LR KL +GL +ISY++VN ++P S+ F L+ + + VYQQ+ + DVW L+ Sbjct: 3869686 LGGLREKLAQDGLADISYMIVNEKAPLSRAMFWELKRRAPEGVPVYQQEILEPDVWQILD 3869865 Query: 125 GNKDDFLIYDR 135 G+KDDFLIYDR Sbjct: 3869866 GDKDDFLIYDR 3869898 Score = 60.8 bits (146), Expect = 1e-07 Identities = 23/38 (60%), Positives = 31/38 (81%) Frame = +1 Query: 135 RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCS 172 RCGRL +H+ LPYSFL F+YVE A+++ Y ++ CGNCS Sbjct: 3872515 RCGRLAFHIPLPYSFLHFRYVESAVRVTYAKDVCGNCS 3872628 Score = 60.1 bits (144), Expect = 2e-07 Identities = 23/38 (60%), Positives = 31/38 (81%) Frame = +3 Query: 135 RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCS 172 RCGRL +H+ LPYSFL F+YVE A+++ Y ++ CGNCS Sbjct: 3874737 RCGRLAFHIPLPYSFLHFRYVESAMRVTYAKDVCGNCS 3874850 Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/gen ome.fa Posted date: Oct 24, 2012 8:30 PM Number of letters in database: 2,589,728,838 Number of sequences in database: 80,983 Lambda K H 0.317 0.133 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,110,426,074 Number of Sequences: 80983 Number of extensions: 15658427 Number of successful extensions: 65737 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 2253 Number of HSP's successfully gapped in prelim test: 418 Number of HSP's that attempted gapping in prelim test: 20407 Number of HSP's gapped (non-prelim): 55258 length of query: 393 length of database: 863,242,946 effective HSP length: 133 effective length of query: 260 effective length of database: 852,472,207 effective search space: 221642773820 effective search space used: 221642773820 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)