SPPSPS2_gallus gi|371559405|gb|JH584428.1| 76.92 52 12 0 173 224 352351 352196 1e-16 89.7 SPPSPS2_gallus gi|371559405|gb|JH584428.1| 90.48 42 4 0 133 174 355160 355035 4e-13 78.2 SPPSPS2_gallus gi|371559405|gb|JH584428.1| 86.84 38 5 0 101 138 355690 355577 8e-12 73.9 SPPSPS2_gallus gi|371559405|gb|JH584428.1| 96.67 30 1 0 225 254 351639 351550 1e-08 63.5 SPPSPS2_gallus gi|371559405|gb|JH584428.1| 72.97 37 10 0 251 287 351319 351209 3e-07 58.9 SPPSPS2_gallus gi|371559405|gb|JH584428.1| 64.10 39 13 1 23 60 356511 356395 4e-06 55.1 SPPSPS2_gallus gi|371559055|gb|JH584778.1| 75.00 52 13 0 173 224 37166 37321 3e-16 89.0 SPPSPS2_gallus gi|371559055|gb|JH584778.1| 72.73 44 12 0 135 178 35015 35146 7e-11 70.9 SPPSPS2_gallus gi|371559055|gb|JH584778.1| 85.71 35 5 0 102 136 24176 24280 2e-10 69.7 SPPSPS2_gallus gi|371559055|gb|JH584778.1| 89.66 29 3 0 225 253 38247 38333 4e-07 58.5 SPPSPS2_gallus gi|371559055|gb|JH584778.1| 75.76 33 8 0 255 287 43273 43371 2e-06 55.8 TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPPSPS2_gallus (289 letters) Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/genom e.fa 80,983 sequences; 2,589,728,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|JH584428.1| Chrysemys picta bellii unplaced genomic scaffold ... 90 1e-16 gb|JH584778.1| Chrysemys picta bellii unplaced genomic scaffold ... 89 3e-16 >gb|JH584428.1| Chrysemys picta bellii unplaced genomic scaffold Group39, whole genome shotgun sequence Length = 515542 Score = 89.7 bits (221), Expect = 1e-16 Identities = 40/52 (76%), Positives = 47/52 (90%) Frame = -1 Query: 173 ERDKVMPLIVRGFRDAAEAAGTSVTGGQTVLNPWVIVGGAASVVCQRQEFIV 224 ER+K+MPLI++GFRDAAE GTSVTGGQTVLNPW+IVGG A+VVCQ EFI+ Sbjct: 352351 EREKIMPLIIKGFRDAAEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFIM 352196 Score = 78.2 bits (191), Expect = 4e-13 Identities = 38/42 (90%), Positives = 38/42 (90%) Frame = -3 Query: 133 PYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQKMTDEER 174 P GRIACANVLSDLYAMGITECDNMLMLLSVSQKMTDE R Sbjct: 355160 PVFQGRIACANVLSDLYAMGITECDNMLMLLSVSQKMTDEVR 355035 Score = 73.9 bits (180), Expect = 8e-12 Identities = 33/38 (86%), Positives = 35/38 (92%) Frame = -1 Query: 101 LGIGTDCCVIPLRHGGLSLVQTTDFFYPLVDDPYMMGR 138 +GIG D CVIPLRHGGLSLVQTTDFFYPLV+DPYMM R Sbjct: 355690 IGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMVR 355577 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/30 (96%), Positives = 29/30 (96%) Frame = -2 Query: 225 PDSAVPGDVLVLTKPLGTQVAVTAHQWLDN 254 PDSAVPGDVLVLTKPLGTQVAV AHQWLDN Sbjct: 351639 PDSAVPGDVLVLTKPLGTQVAVNAHQWLDN 351550 Score = 58.9 bits (141), Expect = 3e-07 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = -1 Query: 251 WLDNPERWNKIKLVVTREEVEAAYREAMFSMATLNRT 287 +L P+RWNKIKLVV++E+VE AY+EAMFSMA LNRT Sbjct: 351319 FLFQPDRWNKIKLVVSKEDVELAYQEAMFSMAMLNRT 351209 Score = 55.1 bits (131), Expect = 4e-06 Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -2 Query: 23 ALGPST-SYRPFDPTSLGLDPNWRLTSYSELRGUGCKVP 60 A GP YRPF+P +LGL P WRLT + ELRG GCKVP Sbjct: 356511 AAGPGPPGYRPFEPEALGLAPGWRLTGFGELRG*GCKVP 356395 >gb|JH584778.1| Chrysemys picta bellii unplaced genomic scaffold Scfld168, whole genome shotgun sequence Length = 3579853 Score = 89.0 bits (219), Expect = 3e-16 Identities = 39/52 (75%), Positives = 47/52 (90%) Frame = +2 Query: 173 ERDKVMPLIVRGFRDAAEAAGTSVTGGQTVLNPWVIVGGAASVVCQRQEFIV 224 ERDKVMPLI++GF+DAAE AGTSVTGGQTVLNPW+++GG A+ VCQ EFI+ Sbjct: 37166 ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM 37321 Score = 70.9 bits (172), Expect = 7e-11 Identities = 32/44 (72%), Positives = 37/44 (84%) Frame = +2 Query: 135 MMGRIACANVLSDLYAMGITECDNMLMLLSVSQKMTDEERDKVM 178 + GRIACANVLSDLYAMG+TECDNMLMLL +S KMTD R ++ Sbjct: 35015 LQGRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDRVRSMLI 35146 Score = 69.7 bits (169), Expect = 2e-10 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +2 Query: 102 GIGTDCCVIPLRHGGLSLVQTTDFFYPLVDDPYMM 136 GIG D CVIPLRHGGLSLVQTTD+ YP+VDDPYMM Sbjct: 24176 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 24280 Score = 58.5 bits (140), Expect = 4e-07 Identities = 26/29 (89%), Positives = 27/29 (93%) Frame = +3 Query: 225 PDSAVPGDVLVLTKPLGTQVAVTAHQWLD 253 PD+AVPGDVLVLTKPLGTQVAV HQWLD Sbjct: 38247 PDNAVPGDVLVLTKPLGTQVAVAVHQWLD 38333 Score = 55.8 bits (133), Expect = 2e-06 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = +1 Query: 255 PERWNKIKLVVTREEVEAAYREAMFSMATLNRT 287 PE+WNKIKLVVT+E+VE AY+EAM +MA LNRT Sbjct: 43273 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRT 43371 Database: /cursos/BI/genomes/project_2013/Chrysemys_picta_bellii/gen ome.fa Posted date: Oct 24, 2012 8:30 PM Number of letters in database: 2,589,728,838 Number of sequences in database: 80,983 Lambda K H 0.321 0.135 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 719,353,720 Number of Sequences: 80983 Number of extensions: 9291804 Number of successful extensions: 38945 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1878 Number of HSP's successfully gapped in prelim test: 417 Number of HSP's that attempted gapping in prelim test: 14969 Number of HSP's gapped (non-prelim): 31375 length of query: 289 length of database: 863,242,946 effective HSP length: 129 effective length of query: 160 effective length of database: 852,796,139 effective search space: 136447382240 effective search space used: 136447382240 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)