genewise output
Score 1012.90 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP03              1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
                     MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
                     MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
gi|357434235|-185190 aacgatggggccgtcgtgacgtggcctcgccaccccga            
                     tagagtccgagttcccatgaggacggcaaattgtttaa            
                     gccgccggcgaggggtcgggctgcccgtgccaggtggg            


SPP03             39                        GKCPENGWDESTLELFLHELAIMDSN 
                                            GKCPENGWDESTLELFLHELAIMDSN 
                                            GKCPENGWDESTLELFLHELAIMDSN 
gi|357434235|-185076 GTACCGA  Intron 1   AAGgatcgagtggaacgcttcgcgaagaa 
                     <0-----[185076:18392-0>gagcaaggaagctatttaatcttaga 
                                            catagtcgtatatactatatacgccc 


SPP03             65 NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRVASALVARRHY           R:R[agg]      
gi|357434235|-183849 attgatggggaggaggtgtggccctAGGTATCTT  Intron 2      
                     attgaggtgagaggtcccttcggaa  <2-----[183772:182126  
                     tcactttgaagagatacaatttttc                         


SPP03             90     FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
                         FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
                         FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
gi|357434235|-182128 TAGGtacgagctggatggccagggtactaaaaattgcgaaacg       
                     -2> ttagtggcgatcctacaccgcgttaatcactttattatc       
                         cttgtaagtttttgaaatactctgcattttgcgctcggt       


SPP03            130                           VHTVANCFVVPMATGMSLTLCFL 
                                               VHTVANCFVVPMATGMSLTLCFL 
                               G:G[ggt]        VHTVANCFVVPMATGMSLTLCFL 
gi|357434235|-182007 GGTATGTA  Intron 3   TAGGTgcaggattggcagagaacacttt 
                      <1-----[182006:18169-1>  tactcagtttctccgtgtctgtt 
                                               ctaaccctattgatagtacatca 


SPP03            154 TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
                     TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
                     TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
gi|357434235|-181622 atccaacagataatccagcatttataaag                     
                     ctgaagcacaattgcgtaaacgtacttcc                     
                     aagcaaagagttagaaacggcctacgcta                     


SPP03            183                           FEPVVIENVLEGDELRTDLKAVE 
                                               FEPVVIENVLEGDELRTDL+AV+ 
                               G:G[ggt]        FEPVVIENVLEGDELRTDLQAVK 
gi|357434235|-181535 GGTAAGAG  Intron 4   TAGGTtgcggagagtggggccagccgga 
                      <1-----[181534:18064-1>  tactttaattagaatgcatacta 
                                               tgtggaattgatcggtacgaaag 


SPP03            207 AKVQELGPDCILCIHSTTSCFAPRVPD                       
                     AKVQELGPD ILCIHSTTSCFAPRVPD                       
                     AKVQELGPDNILCIHSTTSCFAPRVPD           R:R[aga]    
gi|357434235|-180577 gagcgcgcgaactactaatttgcagcgAGGTAAATG  Intron 5    
                     cataatgcaattgtaccccgtccgtca  <2-----[180494:177573
                     tacgatgttctgtttttactttgggtt                       


SPP03            234     LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ            
                         LEELAVICAN+ IPHIVNNAYGVQSSKCMHLIQQ            
                         LEELAVICANFGIPHIVNNAYGVQSSKCMHLIQQ            
gi|357434235|-177575 TAGAcggcggatgatgaccagaagtggcttataccacc            
                     -2> taatcttgcatgtcattaacagtaccagtattaa            
                         aaagtgtttttctatacttttaggtagtgcctgg            


SPP03            269                        GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRIDAFVQSLDKNFMVPVGGAI 
gi|357434235|-177469 GTAAGAA  Intron 6   TAGggcggaaggtgcatgaatagcgggga 
                     <0-----[177469:17076-0>gcgtggtacttagtaaatttctggct 
                                            gtattaattttgcgcattgtaatcta 


SPP03            295 IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFNDSFIQEISKMYP          G:G[ggg]        RASASP 
gi|357434235|-170686 aggtagttacgaaaatcGGTAAATA  Intron 7   CAGGGagtgtc 
                     tcgtaacttaatgatac <1-----[170634:17050-1>  gccccc 
                     ttctttcctgaccggta                          atatat 


SPP03            319 SLDVLITLLSLGSNGYKKLLKERK                       EM 
                     SLDVLITLLSLGSNGY+KLLKERK                       EM 
                     SLDVLITLLSLGSNGYQKLLKERK                       EM 
gi|357434235|-170481 ttggcaatttcgtagtcactagaaGTAAGCT  Intron 8   CAGga 
                     ctatttcttctgcagaaattaaga<0-----[170409:15344-0>at 
                     tatctttaaataatctgaaaaaag                       ag 


SPP03            345 FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
                     FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
                     FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
gi|357434235|-153440 tttttacaaattggtagactcaccacatt                     
                     tcatcaataatcacaaagttaccaactct                     
                     tatgccaagggaacctaaggtatctcata                     


SPP03            374                           MTLKTLDEHRDKAVTQLGSMLFT 
                                               +TLKTLD+H DKAVTQLGSMLFT 
                               A:A[gct]        VTLKTLDKHHDKAVTQLGSMLFT 
gi|357434235|-153353 GGTAATTT  Intron 9   CAGCTgacaatgaccgaggaccgtacta 
                      <1-----[153352:15188-1>  tctactaaaaaactcatgctttc 
                                               gataaatactcatctgtctgttc 


SPP03            398 RQVSGA                          VVPLGSMQTVSGYTFRG 
                     RQVSGA                          VVPLGS+QTVSGYTFRG 
                     RQVSGA           R:R[agg]       VVPLGSLQTVSGYTFRG 
gi|357434235|-151815 acgtggAGGTACGTA  Intron 10  CAGGggccgtccagagtatag 
                     gatcgc  <2-----[151795:15029-2> ttctgctactggactgg 
                     agttac                          tgttgtgatgtcttcac 


SPP03            422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESD 
                     FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLD CLK +RKE+SKESD 
                     FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDSCLKTIRKEQSKESD 
gi|357434235|-150239 tatcaaatctgtcaggtgagaaacgggctaaacgattaaaaagcaagag 
                     ttcacaaacgcatacccctgtataatatttagtaggtactgaaagaaga 
                     tgatattctttccttaaccaggggtgcgcagatcctagaaaaaatagtt 


SPP03            471 DNYDKTEDVDIEEMALKLDNVLLDTYQDASS                   
                     DNYDKTEDVDIEEMALKLDN LLDT QDASS                   
                     DNYDKTEDVDIEEMALKLDNALLDTQQDASS                   
gi|357434235|-150092 gatgaaggggaggagtacgagccgaccggtt                   
                     aaaaacaatataatctataacttacaaaccc                   
                     ctccatatgttaagtaaattattcaggttta                   


//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>gi|357434235|gb|JH378128.1|:subseq(11165398,335190).pep
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI
MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS
LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
TAGFEPVVIENVLEGDELRTDLQAVKAKVQELGPDNILCIHSTTSCFAPRVPDRLEELAV
ICANFGIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND
SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYQKLLKERKEMFSYLSNQIKKLSEAYN
ERLLHTPHNPISLAVTLKTLDKHHDKAVTQLGSMLFTRQVSGARVVPLGSLQTVSGYTFR
GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDSCLKTIRKEQSKESDDNYDKTEDVD
IEEMALKLDNALLDTQQDASS
//
>gi|357434235|gb|JH378128.1|:subseq(11165398,335190).[185190:149998].sp
ATGAACCGCGAGAGCTTCGCGGCGGGCGAGCGACTGGTGTCGCCGGCTTACGTGAGGCAG
GGCTGTGAGGCCCGCCGCTCGCATGAGCACCTCATACGGCTGCTTCTGGAGAAGGGCAAA
TGTCCAGAGAATGGCTGGGATGAAAGTACACTTGAACTCTTTTTACATGAACTTGCAATC
ATGGACAGCAACAATTTCTTAGGCAATTGTGGTGTGGGAGAAAGGGAAGGGAGAGTTGCA
TCCGCATTAGTTGCTCGTCGTCATTACAGGTTCATTCATGGGATTGGACGATCGGGTGAT
ATTTCTGCTGTGCAACCAAAAGCTGCAGGCTCTAGCCTTTTGAACAAAATTACTAATTCT
TTGGTCCTGGACATTATCAAGCTGGCTGGTGTCCATACAGTAGCCAACTGCTTTGTAGTT
CCTATGGCAACTGGAATGAGTCTAACCCTATGTTTCTTAACATTACGGCACAAAAGACCA
AAGGCAAAGTATATTATATGGCCACGAATAGACCAGAAGTCCTGCTTTAAATCCATGATC
ACTGCAGGTTTTGAGCCTGTGGTGATAGAAAATGTTTTGGAAGGTGACGAGCTGCGTACA
GACCTGCAAGCAGTAAAGGCTAAAGTCCAGGAACTTGGGCCTGATAACATTCTGTGTATT
CATTCTACTACATCCTGTTTTGCTCCGAGGGTGCCTGATAGACTAGAAGAACTGGCTGTG
ATTTGTGCTAATTTTGGCATTCCACATATAGTCAATAATGCTTATGGAGTGCAGTCTTCA
AAGTGTATGCACCTCATTCAGCAGGGGGCTCGAGTTGGTAGAATAGATGCTTTTGTTCAG
AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGCGCTATAATTGCTGGCTTTAATGAT
TCCTTCATTCAGGAAATCAGCAAGATGTATCCAGGGAGAGCTTCAGCTTCACCTTCTTTA
GATGTCCTTATTACTTTATTATCACTTGGATCAAATGGCTATCAGAAACTATTAAAAGAA
AGAAAGGAAATGTTTTCATATTTGTCCAACCAAATAAAGAAGTTGTCAGAAGCCTACAAT
GAAAGACTGTTGCATACACCTCACAATCCCATATCTTTAGCTGTGACACTTAAAACATTA
GATAAACACCATGACAAAGCTGTCACTCAGCTTGGCTCTATGCTTTTTACCAGACAGGTT
TCTGGAGCCAGGGTTGTGCCTCTTGGGTCTCTGCAAACTGTGAGTGGCTATACTTTCAGA
GGCTTTATGTCACATACAAATAATTACCCTTGTGCTTACCTCAATGCTGCATCAGCCATC
GGAATGAAGATGCAGGATGTGGACCTGTTCATAAAGAGACTTGACAGCTGTTTAAAGACA
ATAAGAAAAGAACAAAGTAAAGAGAGTGATGACAATTACGACAAAACTGAAGATGTGGAT
ATTGAAGAAATGGCTTTAAAACTAGATAATGCACTTCTTGACACACAGCAGGATGCTTCT
TCA
//
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	match	185190	150000	1012.90	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	185190	185077	0.00	-	0	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	185076	183928	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	183927	183773	0.00	-	0	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	183772	182126	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	182125	182007	0.00	-	1	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	182006	181694	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	181693	181535	0.00	-	2	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	181534	180649	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	180648	180495	0.00	-	2	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	180494	177573	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	177572	177470	0.00	-	1	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	177469	170765	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	170764	170635	0.00	-	0	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	170634	170502	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	170501	170410	0.00	-	2	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	170409	153447	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	153446	153353	0.00	-	0	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	153352	151887	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	151886	151796	0.00	-	2	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	intron	151795	150292	0.00	-	.	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
gi|357434235|gb|JH378128.1|:subseq(11165398,335190)	GeneWise	cds	150291	150000	0.00	-	1	gi|357434235|gb|JH378128.1|:subseq(11165398,335190)-genewise-prediction-1
//