genewise output
Score 638.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP01              1 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWA 
                     MKTAEN RGTGSDGP KRGLCVLCGLPAAGKSTFARALAHRL+QEQGWA 
                     MKTAENSRGTGSDGPLKRGLCVLCGLPAAGKSTFARALAHRLRQEQGWA 
gi|357434253|-157002 aaaggatagagaggccacgctgctgccgggatatgcgcgcacccgcgtg 
                     taccaacggcggagctaggtgttggtcccgacctcgctcagtgaaaggc 
                     ggccgccaaccccgggaacccccccccgaaagtcgcccccggggggcgc 


SPP01             50 IGVVAYDDVMPDAFLAGARARPA                       PSQ 
                     +GVVAYDDVMPDAFLAGA A PA                       PSQ 
                     VGVVAYDDVMPDAFLAGASALPA                       PSQ 
gi|357434253|-156855 gggggtgggacggtcgggagccgGTCAGTA  Intron 1   TAGctc 
                     tgttcaaattcacttcgcgctcc<0-----[156786:15441-0>cca 
                     ccccgttccgacgtccgactcgg                       aca 


SPP01             76 WKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLI 
                     WKLLRQELLKYLEYFLMAVINGCQMS PPNRTEAMWEDFITCLKDQDLI 
                     WKLLRQELLKYLEYFLMAVINGCQMSAPPNRTEAMWEDFITCLKDQDLI 
gi|357434253|-154401 tatcccgctatcgtttaggaagtcatgccaaaggatggtaattagcgca 
                     gattgaattaataatttcttaggatccccagcactgaattcgtaaaatt 
                     gagtagagggcgaccggtgttgtggtcaccgtacggattaccagtatga 


SPP01            125 FSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK     
                     ++AAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK     
                     LNAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK     
gi|357434253|-154254 caggtggctttctaaaggtactttgtggatttcaaatggtccgca     
                     tacctacacgattcacctcgctttttaaataaagtgaataatcga     
                     ttaatgcgtcccaaattttatatgtgtcttttatgataccagtga     


SPP01            170                           SLGFCQLFLDCPLETCLQRNGQR 
                                               SLGFCQLFLDCPLETCLQRNGQR 
                               Y:Y[tat]        SLGFCQLFLDCPLETCLQRNGQR 
gi|357434253|-154119 TGTAATTA  Intron 2   CAGATttgttccttgtccgattcaagca 
                      <1-----[154118:15388-1>  ctgtgatttagctacgtagagag 
                                               agctcgctattttgctaggtcgg 


SPP01            194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA        
                     P+ALP ETI LMGRKLEKPNPEKNAWEHNSLT+ SP CAS A        
                     PRALPAETIRLMGRKLEKPNPEKNAWEHNSLTLQSPVCASGA        
gi|357434253|-153810 ccgccggaaccagaacgacacgaagtgcaacaccacgtgtgg        
                     cgctccactgttggataacacaaacgaaagtctagctgccgc        
                     aaagttgcccggaaggagcctgatcgaccccaggtagtcagc        


SPP01            236                           LEVTDLLLTALENPVKYAEDNME 
                                               LEVTDLLLTALENPVKYAEDN+E 
                                S:S[agc]       LEVTDLLLTALENPVKYAEDNLE 
gi|357434253|-153684 AGGTATTCC  Intron 3   TAGCcggagttcagtgacgatgggacg 
                       <2-----[153682:15119-2> tatcatttcctaactaacaaata 
                                               gggttagcttgataaattgctga 


SPP01            260 QK                       DTDRIICSTNILHKTDQTLRRIVS 
                     QK                       DTDRIICSTNILH  D TLRRIVS 
                     QK                       DTDRIICSTNILHTADVTLRRIVS 
gi|357434253|-151127 caGTAAAGC  Intron 4   TAGgagaaattaaaccagggaccaagt 
                     aa<0-----[151121:15062-0>acagttgccattaccatctggttc 
                     ag                       cacatttaactttattgacaatat 


SPP01            286 QTMKEAK                          NQEAFSEMTFKQRWV- 
                     QTMKEAK                              FSEMTFKQR    
                     QTMKEAK          G:G[ggc]        ----FSEMTFKQRCKR 
gi|357434253|-150556 caaaggaGGTATGAT  Intron 5   AAGGC    ttgaatacataa 
                     actaaca <1-----[150534:15015-1>      tcatctaaggag 
                     gaggaaa                              caggatgaataa 


SPP01            309 --RANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLS          
                       R N   IWR ILGNEHIKCRS + G L+C RI +RPLS          
                     RERTNRPGIWRTILGNEHIKCRSPEAGCLECYRIRERPLS          
gi|357434253|-150119 agaaaccgataaacgagcaataacgggttgttaaagacta          
                     gagcagcgtggcttgaaatagggcacggtagagtgagctg          
                     aaaactatcggctactaccgcacaatttgatcacaggagc          


//
Making a Y in phase 1 intron
Making a S in phase 2 intron
Making a G in phase 1 intron
>gi|357434253|gb|JH378110.1|:subseq(9921558,307002).pep
MKTAENSRGTGSDGPLKRGLCVLCGLPAAGKSTFARALAHRLRQEQGWAVGVVAYDDVMP
DAFLAGASALPAPSQWKLLRQELLKYLEYFLMAVINGCQMSAPPNRTEAMWEDFITCLKD
QDLILNAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
CPLETCLQRNGQRPRALPAETIRLMGRKLEKPNPEKNAWEHNSLTLQSPVCASGASLEVT
DLLLTALENPVKYAEDNLEQKDTDRIICSTNILHTADVTLRRIVSQTMKEAKGFSEMTFK
QRCKRRERTNRPGIWRTILGNEHIKCRSPEAGCLECYRIRERPLS
//
>gi|357434253|gb|JH378110.1|:subseq(9921558,307002).[157002:149998].sp
ATGAAGACCGCCGAGAACTCCAGAGGAACCGGCAGCGACGGGCCGCTGAAACGAGGCCTC
TGCGTCCTCTGCGGCCTCCCCGCGGCAGGAAAATCGACTTTCGCGCGCGCCCTCGCCCAC
AGGCTGCGGCAGGAGCAGGGCTGGGCCGTCGGCGTCGTCGCGTATGATGACGTCATGCCA
GACGCGTTTCTCGCCGGGGCAAGCGCTCTCCCGGCGCCATCCCAATGGAAATTGCTTCGA
CAGGAACTGTTGAAGTACCTGGAATACTTCTTGATGGCTGTGATTAATGGGTGTCAGATG
TCTGCCCCACCCAACAGGACTGAAGCCATGTGGGAAGATTTTATAACCTGCTTAAAGGAT
CAAGATCTGATACTTAATGCAGCATTTGAGGCCCAGTCTTGCTACCTCTTAACAAAAACT
GCTGTTTCTAGACCTTTATTTTTGGTTTTGGATGACAATTTTTATTATCAAAGTATGAGA
TATGAAGTCTACCAACTGGCTCGGAAATATTCATTGGGCTTTTGCCAGCTCTTTTTAGAT
TGTCCTCTTGAGACCTGTTTACAGAGGAATGGCCAGAGGCCACGAGCACTGCCTGCTGAG
ACCATCCGCCTGATGGGAAGAAAGCTGGAAAAGCCCAACCCTGAGAAAAATGCCTGGGAA
CACAACAGCCTCACACTGCAGAGTCCAGTGTGTGCCTCAGGGGCCAGCCTGGAGGTGACT
GATTTATTGCTCACTGCTTTGGAAAATCCAGTAAAATATGCTGAGGACAATCTGGAACAA
AAGGACACAGACAGAATTATTTGTTCAACAAACATTCTTCATACAGCTGATGTGACACTC
CGAAGAATTGTATCTCAGACAATGAAGGAAGCAAAAGGCTTCTCAGAGATGACATTTAAG
CAAAGATGTAAAAGAAGAGAAAGAACAAACCGTCCAGGTATCTGGAGGACCATTCTAGGC
AATGAACACATCAAGTGCAGAAGCCCAGAAGCTGGTTGTTTGGAATGTTACAGAATCAGA
GAGAGGCCATTGAGC
//
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	match	157002	150000	643.40	-	.	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	cds	157002	156787	0.00	-	0	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	intron	156786	154411	0.00	-	.	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	cds	154410	154119	0.00	-	0	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	intron	154118	153882	0.00	-	.	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	cds	153881	153683	0.00	-	2	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	intron	153682	151198	0.00	-	.	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	cds	151197	151122	0.00	-	1	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	intron	151121	150629	0.00	-	.	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	cds	150628	150535	0.00	-	0	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	intron	150534	150158	0.00	-	.	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
gi|357434253|gb|JH378110.1|:subseq(9921558,307002)	GeneWise	cds	150157	150000	0.00	-	2	gi|357434253|gb|JH378110.1|:subseq(9921558,307002)-genewise-prediction-1
//